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InferENA is a Snakemake pipeline that downloads RNA-Seq data in FASTQ format from European Nucleotide Archive (ENA) and infers library type using Salmon. Sequencing reads are downloaded via aspera client (high-speed data transfer) based on the following tutorial. Additionally, most plausable adapters are inferred by subsetting reads from the FASTQ files and performing a naive grep search against an internal database of known adapter sequences.
High Throughput Sequencing, Next Generation Sequencing, Reproducible Research, RNA-Seq, Snakemake
High Throughput Sequencing, Next Generation Sequencing, Reproducible Research, RNA-Seq, Snakemake
| selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | 0 | |
| popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network. | Average | |
| influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | Average | |
| impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network. | Average |
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