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ZENODO
Dataset . 2020
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2020
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2020
License: CC BY
Data sources: ZENODO
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Putative human enhancers based on ReMap 2018 (hg38)

Authors: van Heeringen, Simon J.;

Putative human enhancers based on ReMap 2018 (hg38)

Abstract

To generate a collection of putative enhancer regions, we collected all transcription factor ChIP-seq peaks from ReMap 2018 (ref remap; http://remap.univ-amu.fr/storage/remap2018/hg38/MACS/remap2018_all_macs2_hg38_v1_2.bed.gz). We took the summit of all peaks and extended these 25 bp up- and downstream. Based on this file, we generated a coverage bedGraph using bedtools genomecov. We performed peak calling on this bedGraph file using bdgpeakcall from MACS2 2.2.7.1, with the following settings: l=50 and g=10. We performed the peak calling twice, setting c to 4 and 30, respectively. All peaks from c=30 were combined with all peaks of c=4 that did not overlap with the peaks of c=30. We then removed all regions on chrM and extended the summit of the peaks 100 bp up- and downstream to generate a final collection of 1,268,775 putative enhancers of 200 bp.

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Keywords

ChIP-seq, enhancers, hg38

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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