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Cantemist corpus: gold standard of oncology clinical cases annotated with CIE-O 3 terminology

Name: Cantemist corpus: gold standard of oncology clinical cases annotated with CIE-O 3 terminology
Keywords: normalization, Oncology, oncology, NER, gold standard, corpus, neoplasm morfology, clinical NLP, NLP, medical NLP

Research datakeyboard_double_arrow_right Dataset 28 Apr 2020 Spanish Publisher:Zenodo

Authors: Miranda-Escalada, Antonio; Farré, Eulàlia; Krallinger, Martin;

doi: 10.5281/zenodo.3932053 , 10.5281/zenodo.3978041 , 10.5281/zenodo.3952175 , 10.5281/zenodo.3878483 , 10.5281/zenodo.3773229 , 10.5281/zenodo.3878488 , 10.5281/zenodo.3929739 , 10.5281/zenodo.3773228

Cantemist corpus: gold standard of oncology clinical cases annotated with CIE-O 3 terminology

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Abstract

Cantemist shared task train and development sets with Gold Standard annotations AND Cantemist test+background set without annotations. It contains the train and development sets of the three subtasks: cantemist-ner, cantemist-norm and cantemist-coding. For subtasks cantemist-norm and cantemist-ner, annotations are distributed in Brat format. See Brat webpage for more information For subtask cantemist-coding, codes are grouped in a TSV file with the following columns (this follows the format used in CodiEsp shared task): filename code In the three subtasks, the goal will be to predict the annotations (either the ANN files or the TSV with the codes) given only the plain text files. In addition, it contains the plain text files of the test and background sets (at this point, they are released together). For further information, please visit https://temu.bsc.es/cantemist/ or email us at encargo-pln-life@bsc.es

Funded by the Plan de Impulso de las Tecnologías del Lenguaje (Plan TL).

Related Organizations

Barcelona Supercomputing Center
Spain

Keywords

normalization, Oncology, oncology, NER, gold standard, corpus, neoplasm morfology, clinical NLP, NLP, medical NLP, clinical coding

4 Research products, page 1 of 1

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