This depository includes supplementary files from the manuscript "PRosettaC: Rosetta based modeling of PROTAC mediated ternary complexes". Link for the paper pre-print: https://www.biorxiv.org/content/10.1101/2020.05.27.119354v1 The code for the protocol is available at https://github.com/LondonLab/PRosettaC A web server for applying the protocol by a simple user interface will soon be available at http://prosettac.weizmann.ac.il Content of this directory: The final models of the train and test sets from the manuscript. The unsuccessful unbound results for the train set. The input files for the bound results. The models for the CRBN-BTK PROTACs 4-11. The best RMSD models of the train set, together with their native models after renumbering their residues for protein-protein interaction analysis. PDBs of bound structures: 5T35, 6BOY, 6BN7, 6BN8, 6BN9, 6BNB, 6SIS, 6HAX, 6HAY, 6HR2. PDBs of unbound structures: 6BOY, 6BN7, 6BN9, 5T35.