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Software . 2020
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Software . 2020
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nf-core/rnafusion: nf-core/rnafusion:1.1.0

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 10 Feb 2020Publisher:Zenodo
Authors: Martin Proks; Maxime Garcia; Rickard Hammarén; Phil Ewels; Chadi Saad; Matthias Stahl; Szilveszter Juhos;
Code repository: https://github.com/nf-core/rnafusion/tree/1.1.0

doi: 10.5281/zenodo.3660813 , 10.5281/zenodo.3946477

nf-core/rnafusion: nf-core/rnafusion:1.1.0

Abstract

v1.1.0 - 2020/02/10 Fusion gene detection tools: Arriba v1.1.0 Ericscript v0.5.5 Fusioncatcher v1.20 Pizzly v0.37.3 Squid v1.5 STAR-Fusion v1.6.0 Visualization tools: Arriba v1.1.0 FusionInspector v1.3.1 Other tools: fusion-report v2.0.1 FastQ v0.11.8 MultiQC v1.7 STAR aligner v2.7.0f Added Added Arriba 1.1.0 #63 Added Batch mode #54 Changed Updated examples and configurations Upgraded fusion-report v1.0.0 to fusion-report v2.0.1 Divided running_tools into fusion and visualization tools Updated STAR in Squid, Fusion-Inspector version to 2.7.0f Upgraded STAR-Fusion v1.5.0 to STAR-Fusion v1.6.0 #83 Parameter igenomesIgnore renamed to igenome #81 Finished STAR-Fusion file renaming #18 Updated logos Updated to nf-core 1.8 TEMPLATE Fixed iGenomes optional, but not really #91 Updated fusioncatcher to latest 1.20 version also solving #95 Removed Variables pizzly_fasta and pizzly_gtf have been removed and replaced with transcript and gtf Jenkisfile, test configuration, pylintrc configuration Removed igenomes.config because the pipeline only supports Ensembl version

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