Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2020
Data sources: ZENODO
addClaim

NetCoMi: Network Construction and Comparison for Microbiome Data

Authors: Stefanie Peschel;

NetCoMi: Network Construction and Comparison for Microbiome Data

Abstract

A minor release with bug fixes and some enhancements. New features Objects of class microNetProps returned from netAnalyze() now have a summary method, which prints the computed network properties in a well-arranged format. gcoda() (originally written by Fang Huaying) now provides the possibility for parallel computing including a progress bar. cclasso() (originally written by Fang Huaying) is extended by a progress bar. The summary methods summary.microNetProps() and summary.microNetComp() are extended by an option for choosing the number of decimal places in the output. plot.microNetProps() has a new argument labelFile, which allows to store the original and renamed node labels in a .txt file. Bug fixes Fixes an error caused by netConstruct() when passing an association or distance matrix to the data argument. The manipulation of node sizes in plot.micronetprops() now works satisfactorily. If node sizes vary (e.g. according to a centrality measure), the argument nodeSizeSpread controls their range so that node sizes differ more strongly the higher its value. Further changes The argument numbTaxa of summary.microNetComp() has been changed into numbNodes. Several functions now have a progress bar instead of a progress message. Minor amendments in the documentation of netAnalyze() (hubPar argument) and netConstruct() (cores argument).

Keywords

microbial association estimation, network analysis, network comparison, differential association, compositional data

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    1
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
    OpenAIRE UsageCounts
    Usage byUsageCounts
    visibility views 30
    download downloads 4
  • 30
    views
    4
    downloads
    Powered byOpenAIRE UsageCounts
Powered by OpenAIRE graph
Found an issue? Give us feedback
visibility
download
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
OpenAIRE UsageCountsDownloads provided by UsageCounts
1
Average
Average
Average
30
4