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Software . 2020
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Software . 2020
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Software . 2020
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knights-lab/SHOGUN: SHOGUN: Accurate, scalable metagenomic quantification with shallow shotgun sequencing

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 19 Jun 2020Publisher:Zenodo
Authors: Hillmann, Benjamin; Danknights; Qiyun Zhu; Bokulich, Nicholas; Caporaso, Greg;
Code repository: https://github.com/knights-lab/SHOGUN/tree/v1.0.8

doi: 10.5281/zenodo.3901811 , 10.5281/zenodo.888974

knights-lab/SHOGUN: SHOGUN: Accurate, scalable metagenomic quantification with shallow shotgun sequencing

Abstract

Updates for this release: Reworks the assign taxonomy command to use significantly less memory. The memory is now not dependent on the size of the alignment file. The LCA is now tree based instead of string based. It is possible to now do a confidence based LCA taxonomic profile

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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