Overview Decomposition-based peak identification (DPI, https://github.com/hkawaji/dpi1) is applied to the FANTOM5 data of rat (rn3), dog (canFam3), and chicken (galGal5): https://fantom.gsc.riken.jp/5/datafiles/phase2.6/basic/ The same parameters to the ones used in the previous paper (Forrest ARR, Kawaji H, Rehli M, et al. Nature 507: 462–470, 2014) was used. Data files Four data files per assembly are prepared as below. tag cluster in the original definition (*.tc.bed.gz) full set of DPI peaks (*.tc.decompose_smoothing_merged.bed.gz) permissive set of DPI peaks (*.tc.decompose_smoothing_merged.ctssMaxCounts3.bed.gz) robust set of DPI peaks (*.tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.bed.gz) Acknowledgement This data set is supported by Research Grant from MEXT to RIKEN Preventive Medicine and Diagnosis Innovation Program, RIKEN Center for Integrative Medical Sciences, and JSPS KAKENHI Grant-in-Aid for Scientific Research No. 16H02902.

{"references": ["Decomposition-based peak identification (DPI), https://github.com/hkawaji/dpi1", "Forrest ARR, Kawaji H, Rehli M, et al. Nature 507: 462\u2013470, 2014", "Lizio M, Harshbarger J, Shimoji H, et al. Genome Biol 16: 22, 2015", "Lizio M, Harshbarger J, Abugessaisa I, et al. Nucleic Acids Res 45: D737\u2013D743, 2017", "Lizio,M., Abugessaisa,I., Noguchi,S., et al. Nucleic Acids Res 47:D752\u2013D758, 2019"]}