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Dataset . 2020
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ZENODO
Dataset . 2020
License: CC BY
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ZENODO
Dataset . 2020
License: CC BY
Data sources: ZENODO
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Molecular datasets from "SMILES-Based Deep Generative Scaffold Decorator for De-Novo Drug Design"

Authors: Arús-Pous, Josep; Patronov, Atanas; Bjerrum, Esben Jannik; Tyrchan, Christian; Reymond, Jean-Louis; Chen, Hongming; Engkvist, Ola;

Molecular datasets from "SMILES-Based Deep Generative Scaffold Decorator for De-Novo Drug Design"

Abstract

Herein find the molecular datasets from "SMILES-Based Deep Generative Scaffold Decorator for De-Novo Drug Design". These were generated with SMILES-based scaffold decorator generative models trained with two training sets (DRD2 and ChEMBL). These generative models require a partially-built molecule (scaffold) as input and output several possible completions for each scaffold. Each dataset corresponds to a model trained with the ChEMBL or DRD2 sets, wither multi-step (ms) or single-step (ss) and the provenance of the scaffolds (validation set, or non-dataset). The molecules generated are annotated with a set of descriptors. The DRD2 datasets have the predicted probability of each molecule to be active on DRD2 (p) obtained from a Random Forest model. The ChEMBL model's descriptors are related to the synthesizability of the molecules (see manuscript). Also, the datasets decorated from validation set scaffolds are annotated whether they are part of the validation set (in_validation).

Changed datasets to revised version.

Keywords

Generative models, Deep learning, SMILES, Ligand series, Marie Sklodowska-Curie Actions

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
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