Supplementary Tables from Mayer et al. submitted "Adding to the Lepidoptera phylogeny: Capturing hundreds of nuclear genes from old museum specimens" (Chapter 1) Table S1. Sample information for the samples included in this study. The percentage of gaps and ambiguities are based on the filtered 1109 loci NT12 dataset. Table S2. Information on published transcriptome and genome data included in this study. Table S3. Accession numbers for COI sequences taken from Genbank. Table S4. Presence/Absence Matrix of taxa in the final alignments. Target-Enrichment taxa are highlighted in yellow. In the first column is the name of the alignment, which is composed of ‘EOG-number’.’Danaus gene name’_’Exon number’_’total number of exons per gene’_’Alignment software combination’. The columns are sorted by the total number of alignments per taxon and the rows are sorted by the total number of species.