Eyebright species maintenance (scripts and data accompanying Becher et al., Plant Communications)

Research datakeyboard_double_arrow_right Dataset 28 Apr 2020 English Publisher:ZenodoFunded by:UKRI | Hybridization and the ori..., UKRI | Evolutionary consequences..., UKRI | Ecological speciation and...

Authors: Becher, Hannes; Brown, Max R; Powell, Gavin; Metherell, Chris; Riddiford Nick J; Twyford, Alex D;

doi: 10.5281/zenodo.3774489 , 10.5281/zenodo.3774488

Eyebright species maintenance (scripts and data accompanying Becher et al., Plant Communications)

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Abstract

This gzipped TAR ball contains data and scripts related to the study on Fair Isle eyebrights by Hannes Becher, Max R. Brown, Gavin Powell, Chris Metherell, Nick J. Riddiford, and Alex D. Twyford, submitted to Plant Communications. Data: genome assembly of Euphrasia arctica, variant call files of the "tetraploid" and "conserved" sets of scaffolds, per-individual k-mer spectra, mapping depths, etc. Scripts: R scripts for the analysis of plant trait data, heterozygosity, ect.; an ipython notebook for the analysis of variant data, and a Mathematica notebook with the derivation of the formulae used to fit pop gen parameters to k-mer spectra.

Related Organizations

University of Edinburgh
United Kingdom
Royal Botanic Garden Edinburgh
United Kingdom
Botanical Society of Britain and Ireland
United Kingdom

Keywords

genome assembly, Euphrasia, k-mers

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