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Deliverable Report D4.2 Descriptor Calculation Algorithms and Methods

Authors: Philip Doganis, Georgia Tsiliki, Haralambos Sarimveis, Haralambos Chomenidis, Georgios Drakakis, Egon Willighagen, Barry Hardy;

Deliverable Report D4.2 Descriptor Calculation Algorithms and Methods

Abstract

This deliverable focuses on extensions to the OpenTox descriptor calculation services, in order to account for the supra-molecular pattern (size, shape, porosity and irregularity of the surface area and coatings) governing the activities, effects and properties of ENMs. New descriptors have been derived by applying image analysis techniques on raw microscopy nanomaterial images. The quantummechanical semi-empirical calculation services using the MOPAC open-source software have been adapted and tested on the special requirements of ENM. Experimentally measured compositions of protein coronas (nano-bio interfaces) have been used as fingerprints of ENMs, addressing ENM exposure and life cycle assessment, as well as human and ecological hazard assessment. Further analysis of protein corona data, based on the integration of information form Gene Ontology (GO) resulted in the derivation of GO descriptors. Finally, the popular Java-based Chemistry Development Kit (CDK) has been extended to include nanomaterial descriptors.

http://www.enanomapper.net/deliverables/d4/150801_eNanoMapper-D4_2final.pdf

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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