MePPi: A complete and flexible workflow for metaproteomics data analyses

Data for an examplary metaproteomics data analysis with the MetaProteomeAnalyzer (MPA) and Prophane software tools. Data is from the PRIDE dataset PXD010550. Files include: protein databases (FASTA) : UniProt Swiss-Prot: UniprotSwP-2020_03.fasta Metagenome (+ Swiss-Prot): MG_BG__UPSP.fasta MS Datasets (MGF): FASP digest: FASP_BGP_A.mgf In-gel digest: InGel_BGP_A.mgf Example results for a single experiment analysis (Sample A, based on: MS data: FASP digest, FASTA: UniProt Swiss-Prot): MPA results: mpa_result-sample_a-fdr_0.05-single_exp.csv Prophane results: prophane_result-sample_a.zip Example results for a multi-experiment analysis (Sample B, based on: MS data: FASP + in-gel digest, FASTA: Metagenome): MPA results: mpa_result-sample_b-fdr_0.01-multi_exp.csv Prophane results: prophane_result-sample_b.zip MPA data dump including preprocessed UniProt Swiss-Prot FASTA (optionally used by conda mpa-server package)

Related Organizations

Otto-von-Guericke University Magdeburg
Germany
Robert Koch Institute
Germany

Keywords

computational biology, environmental proteomics, microbiome, metaproteomics

Impact byBIP!

	selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average