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ZENODO
Dataset . 2020
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2020
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2020
License: CC BY
Data sources: Datacite
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Test data for running snakePipes : WGBS workflow

Research datakeyboard_double_arrow_right Dataset 12 Mar 2020 English Publisher:Zenodo
Authors: Sikora, Katarzyna; Bioinfo Core;

doi: 10.5281/zenodo.3707727 , 10.5281/zenodo.3707726

Test data for running snakePipes : WGBS workflow

Abstract

Test files for running snakePipes workflows snakePipes are pipelines built using snakemake and python for the analysis of epigenomic datasets. Please refer to this link for further information on snakePipes. This folder contains test files that can be used to run the WGBS workflow under snakePipes. To test the workflow, follow the following steps : Download or prepare genome fasta, indices and annotations for the mouse (GRCm38) genome. Download and install snakePipes via `conda create -n snakePipes -c mpi-ie -c bioconda -c conda-forge snakePipes` Update Genome configuration file with path to indices and annotations. Move to this repository and run the example command.sh

Related Organizations
Keywords

WGBS, snakePipes, MPI-IE

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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