Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Conference object . 2020
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Other literature type . 2020
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Conference object . 2020
License: CC BY
Data sources: Datacite
versions View all 2 versions
addClaim

Developing Semantic Technology for Toxicology Applications: Interdisciplinary Collaborations and Community Development

Authors: Thessen, Anne E; Callahan, Tiffany J; Chan, Lauren E; Willis, Mary; Vasilevsky, Nicole; Boyles, Rebecca; Kulkarni, Resham; +4 Authors

Developing Semantic Technology for Toxicology Applications: Interdisciplinary Collaborations and Community Development

Abstract

Modern toxicology is evolving to leverage data science methodologies to better address complex public health and environmental concerns. Understanding the potential adverse impacts of environmental exposures requires working across a variety of domains and data types that are often siloed and require manual curation and extraction. Ontologies and semantic engineering can facilitate meaningful data integration, but existing semantic standards have not been widely used in toxicology. Development of semantic standards for toxicology requires sustained interdisciplinary collaborations. One place where the community came together to discuss this need is the “Computable Exposures” workshop, held at Oregon State University in September 2019. Ontologists, toxicologists, epidemiologists, exposure scientists, ecotoxicologists, clinicians, computer scientists, computational biologists, and data scientists from academia, government, and industry were in attendance. Here we describe community-building efforts, standards development, and plans for future work. Objectives include building a semantic exposure data model using the Environmental Conditions, Treatments, and Exposures Ontology (ECTO), developing toxicology-driven use cases and competency questions, creating a mailing list, and planning a larger computable exposures conference. Twelve use cases were developed during the workshop, for example, using semantic technology to complete Adverse Outcomes Pathway (AOP) and Aggregate Exposure Pathway (AEP) given the initiating and terminal key events. Broader adoption of ontologies, together with increased data sharing, has the potential to improve a toxicologist’s ability to integrate, navigate, and analyze vast amounts of heterogeneous data—allowing for more rapid safety assessment of chemical and environmental exposures, and increased understanding of underlying biological mechanisms across species.

Keywords

exposure, standards, ontology, toxicology

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
    OpenAIRE UsageCounts
    Usage byUsageCounts
    visibility views 3
    download downloads 3
  • 3
    views
    3
    downloads
    Powered byOpenAIRE UsageCounts
Powered by OpenAIRE graph
Found an issue? Give us feedback
visibility
download
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
OpenAIRE UsageCountsDownloads provided by UsageCounts
0
Average
Average
Average
3
3
Green