Platynereis EM training data

Training data for Convolutional Neural Networks used in the publication Whole-body integration of gene expression and single-cell morphology. We provide training data for segmenting structures in the SerialBlockface Electron Microscopy data-set containing a complete 6 day old Platynereis dumerilii larva, in particular for: - cell membranes: 9 training blocks @ resolution 20x20x25 nm. Based on initial training data provided by https://ariadne.ai/. - cilia: 3 training and 2 validation blocks @ resolution 20x20x25 nm. - cuticle: 5 training blocks @ resolution 40x40x50 nm. - nuclei: 12 training blocks @ resolution 80x80x100 nm. Based on initial training data provided by https://ariadne.ai/. For details on how to use this data for training, see https://github.com/platybrowser/platybrowser-backend/tree/master/segmentation.

Keywords

CNN; Training Data; Machine Learning; Volume Electron Microscopy; Ultrastructure

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