mm10 genome index for kallisto used for RNA velocity

This is the kallisto index build for the mm10 genome (Ensembl release 98) reflecting the spliced and unspliced transcripts needed to run the RNA velocity analysis (velocyto.R) from Manno et al. 2018. This index was build based on the description at https://bustools.github.io/BUS_notebooks_R/velocity.html and applied to our murine data (Arrayexpress ID: E-MTAB-8751). Results can be obtained at our FairdomHub instance (https://fairdomhub.org/studies/713/snapshots/1) or via our open access publication: https://www.mdpi.com/2073-4409/9/2/318 This work has been funded by the European Social Funds (ESF/14-BM-55-0027/18).

Related Organizations

University of Rostock
Germany

Keywords

RNA velocity, Kallisto, mm10 genome, scRNAseq, Ensembl 98

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