Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Conference object . 2019
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Conference object . 2019
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Conference object . 2019
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
https://doi.org/10.5281/zenodo...
Article . 2019
License: CC BY
Data sources: Sygma
versions View all 4 versions
addClaim

In silico approach for the design of a culture medium for `Candidatus Liberibacter solanacearum´

Authors: Herrero M.C., Barbé S.;

In silico approach for the design of a culture medium for `Candidatus Liberibacter solanacearum´

Abstract

the laboratory. We are working in a genome annotation-based in silico approach for the design of a culture medium for this bacterium. The first consideration is to understand how this bacterium is provided with carbon and energy source compounds, as well as nitrogen and sulphur compounds. Thus, none of the sequences in its gene repertoire suggests that it is capable of transporting sucrose or fructose, leading to hypothesize that glucose is a major form of reduced carbon, and therefore glucose may be the main or the only source of energy and carbon. CaLsol can only synthesize de novo 6 aminoacids, and none of them is asparagine or tryptophan. Moreover, CaLsol lacks the enzymes required for incorporation of sulphur-containing inorganic compounds into amino acids, but the reduction of sulphate by a non-canonic enzymatic process or the use of an alternative terminal electron acceptor under anaerobic conditions cannot be ruled out. Also, it appears to be able to incorporate ammonia into glutamine. Concerning vitamins, no sequences matching complete transporters for riboflavin, pyridoxal phosphate, niacin, cobalamin, biotin or folate were found in the genome. Thiamine cannot be synthesized, but all three constituents of a typical prokaryotic thiamine ABC transporter are present. The source of NAD is nowadays unknown because it cannot synthesize or transport niacin. This bacterium lacks the Opp ABC oligopeptide transporters which partly accounts for the recycling of wall cell peptides, so the presence in the culture medium of cell wall components should aid in the growth of it. Culture temperature should not surpass 32.5ºC as cell membrane LpxL is absent in CaLsol. We are currently working on two approaches to try to achieve the growth of CaLsol in the laboratory, always taking into account some of the main traits of the genome of this bacterium. On the one hand, the use of complex culture media which, according to their general composition, could allow the growth of bacteria with significant deficiencies. On the other hand, the use of defined culture media supplemented with carrot phloem extract and other additives.

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
    OpenAIRE UsageCounts
    Usage byUsageCounts
    visibility views 2
    download downloads 1
  • 2
    views
    1
    downloads
    Powered byOpenAIRE UsageCounts
Powered by OpenAIRE graph
Found an issue? Give us feedback
visibility
download
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
OpenAIRE UsageCountsDownloads provided by UsageCounts
0
Average
Average
Average
2
1
Green