Data from the article: "The mitochondrial phylogeny of land plants shows support for Setaphyta under non-stationary substitution models" Filipe de Sousa, Peter Civáň, João Brazão, Peter G. Foster, Cymon J. Cox These data are divided in four folders: * 1_36_gene_nt_alignments_&_trees - contains 36 single gene nucleotide alignments and the corresponding trees inferred from a MCMC analysis on the program p4 * 2_36_gene_aa_alignments_&_trees - contains 36 single gene amino acid alignments and the corresponding trees inferred from a MCMC analysis on the program p4 * 3_concatenated_alignments_&_trees - contains the nucleotide, codon-degenerate and amino acid alignments of 36 concatenated genes and the corresponding trees inferred from MCMC analyses on the programs p4 and phylobayes with composition homogeneous, tree-heterogeneous and site-heterogeneous models; trees correspond to figures S1-S7 on the online supplemental file. * 4_concatenated_ML_trees - contains the ML trees from the analyses of the concatenated datasets (nucleotide, codon degenerate and amino acid).

This work was supported by the Portuguese Foundation for Science and Technology (FCT) through project grant PTDC/BIA-EVF/1499/2014 to C.J.C. and national funds from FCT through project UID/Multi/04326/2019. This study also received support from the Portuguese node of ELIXIR, specifically BIODATA.PT ALG-01-0145-FEDER-022231.