Discriminant analysis in Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization.

This archive contains necessary files to perform a discriminant analysis in order to classify the Kandabadicivirus sequence among many hosts: arthropods, birds, mammals, mollusks, and plants. First, decompress the fasta sequences (sequences.zip) in a directory named sequences. Then: for i in sequences/*.fasta; do echo $i; python3 scripts/fasta2count.py $i ${i%.fasta}.csv; done You now have csv files along with corresponding fasta files (csv are provided in this archive). You can now perform discriminantAnalysis.R in R software to obtain the discriminant analysis and make a graphical output named "discrimin.pdf".

Related Organizations

Institut Pasteur
France

Keywords

discriminant analysis kandabadicivirus classification R

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