Test data for sv-callers workflow

This distribution contains data analyzed by the sv-callers workflow (v1.1.0). It includes sequence files in FASTA, ENCODE regions in BED, detected structural variants (SVs) in VCF, workflow config files and Jupyter Notebook with R code that compares the SV call sets and generates figures (Venn & UpSet diagrams). Large BAMs including index files were excluded due to max. upload file size, however, these files are freely available from the NCBI FTP server and the ENA database (see README files).

Related Organizations

Dutch Research Council
Netherlands
Netherlands eScience Center
Netherlands
University Medical Center Utrecht
Netherlands

Keywords

Genome in a Bottle, cancer genomics, SV calling, benchmark, somatic, SV detection, human genome, structural variation, genomics, structural variants, cell lines, germline

Impact byBIP!

	selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	1
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average