Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2019
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2019
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2019
License: CC BY
Data sources: ZENODO
versions View all 2 versions
addClaim

Rare Nature of Crystals of the Novel Multimeric Haloalkane Dehalogenase DpaA from Paraglaciecola agarilytica NO2.

Authors: Andrii Mazur; Daria Mrazova; Tatyana Prudnikova; Pavel Grinkevich; Jeroen R. Mesters; Barbora Kascakova; Petra Havlickova; +6 Authors

Rare Nature of Crystals of the Novel Multimeric Haloalkane Dehalogenase DpaA from Paraglaciecola agarilytica NO2.

Abstract

Manuscript reports on novel haloalkane dehalogenase DpaA isolated from a psychrophilic and halophilic bacterium Paraglaciecola agarilytica NO2 that was crystallized and two independent crystallization and data collection experiments resulted in several data sets with a resolution ranging from 2.2 to 3.7 Å. X-ray diffraction data analysis hinted at oligomeric nature of DpaA leading to certain issues with the solution of structure. Our results unveil a rare example of an oligomeric dehalogenase belonging the subfamily I as well as highlight new findings in the solution of crystallographic data with unusual crystal packing. The crystal structures of HLD-I subfamily already deposited into the PDB database are monomeric. There are only a few examples of oligomeric haloalkane dehalogenases from the other subfamilies HLD-II and HLD-III that can form dimers and tetramers. The crystal structures of enzymes from the HLD-III subfamily showing oligomeric properties in gel-filtration experiments have not been solved to date. DpaA’s propensity to oligomerization likely causes the problems with solution of the structure, such as pseudo-translation, in a wide range of crystallization conditions and across various crystal lattices. Our results contribute to explaining new findings in solving the structures of oligomeric proteins that exhibit unusual crystal packing and mark the DpaA enzyme as an uncommon oligomeric example of the HLD-I subfamily.

Keywords

crystallization; halogenated pollutants; haloalkane dehalogenase; DpaA; oligomerization.

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
    OpenAIRE UsageCounts
    Usage byUsageCounts
    visibility views 4
  • 4
    views
    Powered byOpenAIRE UsageCounts
Powered by OpenAIRE graph
Found an issue? Give us feedback
visibility
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
0
Average
Average
Average
4