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ZENODO
Dataset . 2019
License: CC 0
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2019
License: CC 0
Data sources: ZENODO
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Underlying data for "Structural Interpretation of Hydrogen-Deuterium Exchange with Maximum-Entropy Simulation Reweighting"

Authors: Bradshaw, Richard T; Marinelli, Fabrizio; Faraldo-Gómez, José D; Forrest, Lucy R;

Underlying data for "Structural Interpretation of Hydrogen-Deuterium Exchange with Maximum-Entropy Simulation Reweighting"

Abstract

This dataset contains code, data, and figures used in the article "Structural Interpretation of Hydrogen-Deuterium Exchange with Maximum-Entropy Simulation Reweighting". Contents: code/* - Underlying code used to analyze molecular dynamics trajectories and calculate predicted HDX-MS data, used to reweight structural ensembles to best fit target HDX-MS data, and used to structurally cluster simulation frames after reweighting data/* - Simulation trajectories of the TeaA protein, along with two sub-trajectories corresponding to only 'closed' or 'open' TeaA frames, and predicted HDX-MS deuterated fractions used as target data in simulation reweighting. figures/* - Underlying data and scripts used to create all figures and movies used in the article. Where appropriate, README files include instructions for regenerating data used in the article, and details of the Python packages used to run Python scripts are available in conda_environment.yml

{"references": ["Bradshaw R.T., Marinelli F. et al., Structural Interpretation of Hydrogen-Deuterium Exchange with Maximum-Entropy Simulation Reweighting, 2019, Biorxiv 769398"]}

Keywords

Molecular simulation, Ensemble refinement, Biophysics, Maximum-entropy reweighting, Hydrogen-Deuterium exchange

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
1
Average
Average
Average
3