LIPID17 POPC Bilayer Simulation (Last 100 ns, 310 K )

Simulation of a POPC bilayer of 500 lipids (250 per leaflet) is simulated for 500 ns using Gromacs v2018.3 in water solution with Na+ counterions. The LIPID17 model (1), AMBER ff15ipq and TIP3P water model are employed. Trajectory (.xtc) is for the last 100 ns of a simulation of 500 ns with data saved every 10 ps. Additionally, the topology (.top), simulation parameter file (.mdp), index file (.ndx), portable binary run input file (.tpr) and the energy output file (.edr) are provided.

Related Organizations

Universidade Lusófona do Porto
Portugal

Keywords

POPE LIPID17 BILAYER, POPC BILAYER LIPID17, LIPID17 POPG Bilayer Simulation (Last 100 ns, 310 K )

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