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Nematode ITS2 database These are the sequence and taxonomy files for the Nematode ITS2 database. This database was created with markerDB. Please see that repository for full details on the file formats. The main database consists of the "seqs_nr.fasta" and the associated "taxonomy_nr.txt". These contain the non-redundant ITS2 sequences. The database is available in some other common formats used for assigning taxonomy and are listed below. dada2: dada2’s assignTaxonomy function rdp: to train a custom RDP database with the rRDP Bioconductor package (this is pretty much the same as assignTaxonomy) mothur: a fasta file and paired mothur taxonomy file. Works with the Nemabiome pipeline. An alignment is also written out that should work with mothur, but can also be used for other pipelines as needed. idtaxa: a fasta file and taxonomy file for IDTAXA.
| selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | 0 | |
| popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network. | Average | |
| influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | Average | |
| impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network. | Average |
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