SAMRI — Small Animal Magnetic Resonance Imaging

SAMRI (Small Animal Magnetic Resonance Imaging) — pronounced "Sam-rye" — provides fMRI preprocessing, metadata parsing, and data analysis functions and workflows. SAMRI integrates functionalities from a number of other packages to create higher-level tools. The resulting interfaces aim to maximize reproducibility, simplify batch processing, and minimize the number of function calls required to generate figures and statistical summaries from the raw data. The package is compatible with small rodent data acquired via Bruker ParaVision.

Related Organizations

Language Center of UZH and ETH Zürich
Switzerland
ETH Zurich
Switzerland
Institute of Neuroinformatics UZH + ETH Zurich
Switzerland
University of Zurich
Switzerland

Keywords

standardization, neuroimaging, small animals, fMRI, functional connectivity, Bruker, ParaVision, biomedical, Free and Open Source, BIDS, seed-based connectivity, FSL, rodents, diffusion weighted imaging, GLM, 3d plotting, visualization, Python

Impact byBIP!

	selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	3
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average