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https://doi.org/10.5281/zenodo...
Article . 2019
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Other literature type . 2019
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ELIXIR-EXCELERATE D6.4: Report on assessment criteria and standardisation of metagenome assembled genomes (MAGs) from Marine samples

descriptionPublicationkeyboard_double_arrow_right Project deliverable , Other literature type , Article 01 Jan 2019 English Publisher:ZenodoFunded by:EC | ELIXIR-EXCELERATE
Authors: Finn, Robert; Mitchell, Alex; Cochrane, Guy; Burgin, Josephine; Willassen, Nils Peder;

doi: 10.5281/zenodo.3234520 , 10.5281/zenodo.3234519

ELIXIR-EXCELERATE D6.4: Report on assessment criteria and standardisation of metagenome assembled genomes (MAGs) from Marine samples

Abstract

Demonstration of the application of completeness/contamination estimates on metagenome assembled genomes (MAGs) produced as part of WP6. These results of these estimates are discussed in relationship of the MIMAGs and MISAGs standards. Survey of the genomes, MAGs and single amplified genomes (SAGs) found in the MAR database. This demonstrates that many of the draft genomes are heavily contaminated and/or incomplete. Description of the new infrastructure in the European Nucleotide Archive, and how this has been structured to accommodate the data generated within WP6 (and more broadly). We also highlight the current limitations and issues of the tools employed to estimate completeness and contamination.

Keywords

single amplified genome, SAG, metagenome assembled genome, MarRef, Metagenome, MarDB, MAG

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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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