Full Changelog Implemented enhancements: add needlestack logo in log.info #182 add INFO field containing allelic frequency #174 Add an option to only plot somatic mutations #149 Make the main 3 processes pipe-friendly to avoid intermediate outputs #147 Re-write pileup2baseindel.pl in C++ #146 Flag possible cross-sample contamination of normal DNA in tumor samples #138 Put ./. genotype when there is no power to identify a variant #137 Implement Tumor-Normal pair somatic variant calling #133 Add alignment plot in the PDF #73 Make a script that would run needlestack without nextflow #72 Fixed bugs: max_dp default value in readme is wrong #176 --help should exit 0 #161 Manage bed specification for both bed and region #157 Using renamed symlinks as input BAM files doesn't work with --use_file_name option #152 Closed issues: How to identify each sample? #166 Github readme != Docker readme #159