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Gene–Tissue relationships from the TISSUES database

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 09 Aug 2015Publisher:Zenodo
Authors: Himmelstein, Daniel; Jensen, Lars Juhl;

doi: 10.5281/zenodo.27244

Gene–Tissue relationships from the TISSUES database

Abstract

We have completed an initial processing of the TISSUES data (repository, notebook). The main output of our analysis is merged.tsv.gz, a table where each row is a tissue (Uberon)--gene (Entrez) pair. For each pair, we provide 5 scores: score_text: score from the text mining channel score_knowledge: score from the UniProtKB/knowledge channel score_experiment: integrated score from the experimental channel score_experiment_unbiased: integrated score from the experimental channel without immunohistochemical staining data from the Human Protein Atlas score_integrated: integrated score combining everything

Keywords

TISSUES, Rephetio

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
1
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9