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Developing, Linking, And Providing Access To Supplemental Genetics Dataset Vcf Files

Authors: Smith, Plato; McIntyre, Lauren;

Developing, Linking, And Providing Access To Supplemental Genetics Dataset Vcf Files

Abstract

This conference proceeding paper is the written version component of the data panel discussion on developing a dataset collection using Zenodo for a professor in the Department of Molecular Genetics & Microbiology at the University of Florida. The “Documenting a Genomics Variant Files Data Management: Developing Research Data management (RDM) workflows and providing research data access via HPC” project inspired this paper. The large vcf datasets used for this project ranged from 34 megabytes to 43 gigabytes. The researcher needed to (1) develop a data repository for supplemental datasets vcf files too large for attachment as supplemental data files for journal submissions, (2) provide digital object identifiers (DOIs) for all vcf dataset files, and (3) link the supplemental vcf dataset files to the journal article via the vcf doi. These three outcomes were accomplished during phase 1 (June 2016 – December 2016) of this project and presented at the GL18 conference at the National Academy of Medicine in New York, New York.

This conference paper is a supplement to the data panel discussion articulated at the 18th International Conference on Grey Literature Conference and made possible from an internal University of Florida Libraries Strategic Opportunity Program (SOP) grant awarded July 2016.

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Keywords

FOS: Computer and information sciences, Variant call format, Data management, Supplemental data, Dataset

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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