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TIBHannover/BacDiveR: Complete transition to ROpenSci-style API

Authors: Katrin Leinweber;

TIBHannover/BacDiveR: Complete transition to ROpenSci-style API

Abstract

This R package provides a programmatic interface to the Bacterial Diversity Metadatabase of the DSMZ (German Collection of Microorganisms and Cell Cultures). BacDiveR helps you improve your research on bacteria and archaea by providing access to "structured information on [...] their taxonomy, morphology, physiology, cultivation, geographic origin, application, interaction" and more (Söhngen et al. 2016). Specifically, you can: download the BacDive data you need for offline investigation, and document your searchers and downloads in .R scripts, .Rmd files, etc. Thus, BacDiveR can be the basis for a reproducible data analysis pipeline. See TIBHannover.GitHub.io/BacDiveR for more details, /news there for the changelog, and GitHub.com/TIBHannover/BacDiveR for the latest source code. It was also built to serve as a demonstration object during TIB's "FAIR Data & Software" workshop. BacDiveR 0.9.0 NEW API: The deprecations announced in v0.8.0 are now completed: The bd_retrieve() family of functions has replaced retrieve_data() and retrieve_search_results() has been renamed to bd_retrieve_by_search(), see #96. Please update scripts and other downstream code that use BacDiveR. purrr is no longer an imported / required dependency, but only suggested due to use in the introductory vignette, see #98.

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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