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The dataset consists of records from whole exome sequecing and bioinformatic analysis which includes genes and gene variants from a Mexican family with recurrence for gastroschisis (two affected half-sisters with gastroschisis, mother, and father of the proband). Release of this dataset was based on the Human Genome annotation, GRCh37/hg19. The full list of tables is described in the file READ ME and remain available in csv files.