Raw diffration images and processing input files/logs of pyruvate phosphate dikinase (PPDK) from the C3 plant Flaveria pringlei. The data was used for PDB entry 5JVN (Minges et al. 2017). Data was collected in two helical scans from the same crystal, each consisting of 3600 images (360°/scan, 0.1°/image). Data were cut according to accumulated radiation damage at 3445 and 3400 images respectively. All data was collected from loop-harvested crystals at beamline ID29 at the European Synchrotron Radiation Facility (ESRF, Grenoble, France) using a wavelength of 0.976252 Å and a Pilatus 6M (Dectris, Baden, Switzerland) detector. The crystal belonged to the spacegroup P622 with unit cell constants a, b ~ 250 Å, c ~ 84 Å, α, β, γ ~ 90°. .