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Frictionless Tabular Data Package for GC-MS Rose scent profile data for Data published in Nature genetics, June, 2018 & Science, July 2015

Authors: Philippe Rocca-Serra; Susanna Assunta Sansone;

Frictionless Tabular Data Package for GC-MS Rose scent profile data for Data published in Nature genetics, June, 2018 & Science, July 2015

Abstract

This dataset, in the form of a Frictionless Tabular Data Package (https://frictionlessdata.io/specs/tabular-data-package/), holds the measurements of 35 known metabolites(all annotated with resolvable CHEBI identifiers and InChi strings), measured by gas chromatography mass-spectrometry (GC-MS) in one Rose cultivars (all annotated with resolvable NCBITaxonomy Identifiers) and one organism part (annotated with resolvable Plant Ontology identifiers). The quantitation types are annotated with resolvable STATO terms. The measurements over these metabolites, which were made in 2 distinct experiments, were extracted from: a supplementary material table, available from https://static-content.springer.com/esm/art%3A10.1038%2Fs41588-018-0110-3/MediaObjects/41588_2018_110_MOESM3_ESM.zip and published alongside the Nature Genetics manuscript identified by the following doi: https://doi.org/10.1038/s41588-018-0110-3, published in June 2018 a supplementary material table available as a pdf from 'Biosynthesis of monoterpene scent compounds in roses' by Magnard et al, Science 03 Jul 2015 identified by the following doi: https://doi.org/10.1126/science.aab0696. This dataset is used to demonstrate how to make data Findable, Accessible, Discoverable and Interoperable (FAIR)and how Frictionless Tabular Data Package representations can be easily mobilised for reanalysis and data science.It is associated to the following project: https://github.com/proccaserra/rose2018ng-notebook with all the necessaryinformation, executable code and tutorials in the form of Jupyter notebooks.

{"references": ["https://doi.org/10.1038/s41588-018-0110-3", "https://doi.org/10.1126/science.aab0696"]}

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Keywords

FAIR data, gas chromatography mass spectrometry, ISA format, interoperability, STATO ontology, Rose scent, Design of Experiment, targeted metabolite profiling, Tabular Data Package

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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