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Epigenetic Timer of Cancer-2

Authors: Teschendorff, Andrew E.;

Epigenetic Timer of Cancer-2

Abstract

epiTOC2.R is an R-script that aims to estimate the mitotic age of a sample profiled genome-wide at the DNA methylation level. It is based on a mitotic clock model where DNA methylation errors occuring during cell-division accrue in the adult stem cell pool of a tissue, allowing tracking of the number of stem-cell divisions. epiTOC2 not only estimates the cumulative number of stem-cell divisions, but also allows the intrinsic rate of stem-cell division per stem-cell per year to be estimated if the chronological age of the sample(s) is known. To run epiTOC2.R, see details within the .R file. Running epiTOC2 requires uploading of a data object, dataETOC2.Rd, as shown in the .R script. This data object contains information regarding the specific CpGs that make up epiTOC2.

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Keywords

DNA methylation, mitotic, cancer risk, epigenetic clock

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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downloads
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1
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56
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Cancer Research