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epiTOC2.R is an R-script that aims to estimate the mitotic age of a sample profiled genome-wide at the DNA methylation level. It is based on a mitotic clock model where DNA methylation errors occuring during cell-division accrue in the adult stem cell pool of a tissue, allowing tracking of the number of stem-cell divisions. epiTOC2 not only estimates the cumulative number of stem-cell divisions, but also allows the intrinsic rate of stem-cell division per stem-cell per year to be estimated if the chronological age of the sample(s) is known. To run epiTOC2.R, see details within the .R file. Running epiTOC2 requires uploading of a data object, dataETOC2.Rd, as shown in the .R script. This data object contains information regarding the specific CpGs that make up epiTOC2.
DNA methylation, mitotic, cancer risk, epigenetic clock
DNA methylation, mitotic, cancer risk, epigenetic clock
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