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Data for Galaxy CLIP-Seq Training Material

Name: Data for Galaxy CLIP-Seq Training Material
Creator: Heyl, Florian
Keywords: eCLIP, CLIP-Seq, RBFOX2, Splicing Factor, Human

Research datakeyboard_double_arrow_right Dataset 03 Aug 2018Publisher:Zenodo

Authors: Heyl, Florian;

doi: 10.5281/zenodo.2579279 , 10.5281/zenodo.1327423 , 10.5281/zenodo.1327370

Data for Galaxy CLIP-Seq Training Material

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Abstract

The eCLIP data provided here is a subset of the eCLIP data of RBFOX2 from a study published by Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). The dataset contains the first biological replicate of RBFOX2 CLIP-seq and the input control experiment (*fastq files). The data was changed and downsampled to reduce data processing time, thus the datasets does not correspond to the original data pulled from Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). Also included is a text file (.txt) encompassing the chromosome sizes of hg19 and hg38 obtained from UCSC (http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.chrom.sizes, http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/hg38.chrom.sizes) and a genome annotation for hg19 (.gtf) taken from Ensembl (http://ftp.ensemblorg.ebi.ac.uk/pub/release-74/gtf/homo_sapiens/) and for hg38 taken from the Galaxy libraries (https://usegalaxy.eu/library/list#folders/F30cab321d898d2fb/datasets/9ba790aa79c9cf23). The data is used for a galaxy training course about CLIP-Seq data analysis.

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Keywords

eCLIP, CLIP-Seq, RBFOX2, Splicing Factor, Human

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Impact byBIP!

	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
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