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Frictionless Tabular Data Package for GC-MS data from the 'Rose Genome' article published in Nature genetics, June, 2018

Authors: Rocca-Serra, Philippe; Sansone, Susanna Assunta;

Frictionless Tabular Data Package for GC-MS data from the 'Rose Genome' article published in Nature genetics, June, 2018

Abstract

This dataset, in the form of a Frictionless Tabular Data Package (https://frictionlessdata.io/specs/tabular-data-package/), holds the measurements of 61 known metabolites (all annotated with resolvable CHEBI identifiers and InChi strings), measured by gas chromatography mass-spectrometry (GC-MS) in 6 different Rose cultivars (all annotated with resolvable NCBITaxonomy Identifiers) and 3 organism parts (all annotated with resolvable Plant Ontology identifiers). The quantitation types are annotated with resolvable STATO terms. The data was extracted from a supplementary material table, available from https://static-content.springer.com/esm/art%3A10.1038%2Fs41588-018-0110-3/MediaObjects/41588_2018_110_MOESM3_ESM.zip and published alongside the Nature Genetics manuscript identified by the following doi: https://doi.org/10.1038/s41588-018-0110-3, published in June 2018. This supplementary material table was deposited to Zenodo and is identified by the following doi: https://doi.org/10.5281/zenodo.2598799 This dataset is used to demonstrate how to make data Findable, Accessible, Discoverable and Interoperable (FAIR) and how Frictionless Tabular Data Package representations can be easily mobilised for reanalysis and data science. It is associated to the following project: https://github.com/proccaserra/rose2018ng-notebook with all the necessary information, executable code and tutorials in the form of Jupyter notebooks.

{"references": ["https://doi.org/10.1038/s41588-018-0110-3"]}

Related Organizations
Keywords

FAIR data, gas chromatography mass spectrometry, ISA format, interoperability, STATO ontology, Rose scent, Design of Experiment, targeted metabolite profiling, Tabular Data Package

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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