Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2018
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2019
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2019
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2018
Data sources: ZENODO
ZENODO
Software . 2018
Data sources: ZENODO
ZENODO
Software . 2019
Data sources: ZENODO
ZENODO
Software . 2019
Data sources: ZENODO
versions View all 3 versions
addClaim

This Research product is the result of merged Research products in OpenAIRE.

You have already added 0 works in your ORCID record related to the merged Research product.

Offline series resistance correction

Authors: Christian Keine;

Offline series resistance correction

Abstract

Matlab(tm) function to perform offline series resistance correction/compensation of recorded currents based on "Traynelis SF (1998) Software-based correction of single compartment series resistance errors. J Neurosci Methods 86:25–34.". During whole-cell voltage-clamp experiments, the resistance across the patch pipette (series resistance) can introduce considerable errors on the amplitude and kinetics of the recorded currents. While in most cases a large portion of this error can be corrected online by the patch-clamp amplifier, the remaining Rs can lead to erroneous estimation of currents. This is especially important if the amount of uncomensated Rs changes during the recording or differs between experiments. A simple software-based solution allows for the correction of the remaining Rs after the experiment for linear current-voltage relationships (e.g. AMPA-R mediated currents; see original publication for details). How to use: Input arguments: data: trace of recorded currents, can be either single vector or multiple traces organized in an array or cell. When the input is an array, the function assumes that the shorter dimension represents the different trials/recordings, i.e. an array of the size 10,000x10 will be treated as 10 recordings with 10,000 data points each Rs: uncompensated series resistance during the recordings in Ohm, i.e. if an Rs of 10 MOhm during the recording was compensated 50% by the amplifier, the uncompensated Rs is 5 MOhm (= 5e6 Ohm) Cm: Membrane capacitance during the recording in Farad (e.g. 10 pF = 10e-12 F) Vhold: holding potential during the recording in Volts (e.g. -60 mV = 0.06 V) Vrev: reversal potential of the recorded current in Volts (e.g. 10 mV = 0.01 V) SR: sampling rate of the recording in Hz (e.g. 50 kHz = 50e3 Hz) fraction: fraction of the remaining Rs which should be compensated (0-1), e.g. 1 if all the remaining Rs should be compensated To execute call function as RsCorrection(data, Rs, Cm, Vhold, Vrev, SR, fraction) Output: dataCorrected: data trace after Rs correction, format is identical to input (i.e. array or cell)

Related Organizations
Keywords

Series resistance, Traynelis, synaptic transmission, Synaptic transmission, patch-clamp, Patch-clamp, series resistance, Series Resistance Compensation

  • BIP!
    Impact byBIP!
    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
    OpenAIRE UsageCounts
    Usage byUsageCounts
    visibility views 4
  • 4
    views
    Powered byOpenAIRE UsageCounts
Powered by OpenAIRE graph
Found an issue? Give us feedback
visibility
citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
0
Average
Average
Average
4