Organized across five simulation scenarios: sim-imbalance - robustness of method to different clonal frequencies sim-multi-clone - robustness to number of clones sim-vary-G - robustness to varying number of genes distringuishing clones sim-quality - robustness to varying quality of data (subsampling reads) sim-vary-prop-genes - robustness to varying proportion of genes with a dosage effect Each directory has two sub directories: sces - collections of SingleCellExperiments where the filename corresponds to parameters used to generate (see Snakefile) fits - csv files holding both ground truth clones and inferred clones from all methods and parameter combinations