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danforthcenter/plantcv: PlantCV v5.0.0rc2

Authors: Noah Fahlgren; Haley Schuhl; Malia Gehan; Hudanyun Sheng; Josh Sumner; Jorge Gutierrez; KeelyBrown; +21 Authors

danforthcenter/plantcv: PlantCV v5.0.0rc2

Abstract

What's Changed Parallel inf images by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1918 fixing and testing a typo by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1916 Hsi support in new indices by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1912 Add request timeout by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1919 monkeypatch open url to avoid various problems by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1924 1862 import APH file in read_cropreporter by @kmurphy61 in https://github.com/danforthcenter/plantcv/pull/1906 Mock dask cluster in tests by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1925 only print verbosity messages in a notebook by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1921 for all metadata terms in length of meta list handle them the same way by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1930 Lazy load chlorophyll by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1927 Lazy load color by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1928 Lazy load alpha by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1929 Make analyze.texture by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1896 Load OJIP data on-demand by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1939 Add green normalized difference vegetative index (GNDVI) by @k034b363 in https://github.com/danforthcenter/plantcv/pull/1942 Delta E by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1905 Quick color check to qc by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1920 Delta e image plot by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1922 Color chip comparison by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1779 Use min_size or max_size depending on scikit-image version by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1954 Unpin pandas 3.0.4 by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1956 Auto recalculate delta e when color correcting by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1931 Output all delta e values by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1934 Restores the time_lapse_video function by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1951 Pixel scatter path flexibility by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1933 Coerce wavelength key types for json dump by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1947 Pin OpenCV to v4.x.x by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1965 Add mean and median saturation and value measurements to color output by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1963 Strip .json extension from CSV filenames in json2csv (Fixes #1679) by @Mohit-Ak in https://github.com/danforthcenter/plantcv/pull/1967 docs: add Mohit-Ak as a contributor for code, and test by @allcontributors[bot] in https://github.com/danforthcenter/plantcv/pull/1968 Timelapse list of arrays by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1959 Kernel format helper by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1943 Apply format kernel to helpers by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1944 Ports change to json2csv from v4 to v5 by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1969 Update analyze.yii fornew psii by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1971 Lazy load psd psl by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1972 Lazy load npq by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1973 Update analyze npq by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1974 Rename analyze yii to ojip by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1980 1976 naive bayes QC by @k034b363 in https://github.com/danforthcenter/plantcv/pull/1977 Plot delta e of dataset by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1935 Lazy load pml mpd by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1984 Lazy load pmt by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1985 Lazy load rfp gfp by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1986 Lazy load spc by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1987 case insensitive extensions for imgformat by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1990 New Contributors @Mohit-Ak made their first contribution in https://github.com/danforthcenter/plantcv/pull/1967 Full Changelog: https://github.com/danforthcenter/plantcv/compare/v5.0.0rc1...v5.0.0rc2

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