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broadinstitute/viral-ngs: v3.0.17

integration_instructionsResearch softwarekeyboard_double_arrow_right Software Under curationPublisher:Zenodo
Authors: Daniel Park; Chris Tomkins-Tinch; Simon Ye; Irwin Jungreis; Ilya Shlyakhter; Hayden Metsky; Cesar Arze; +9 Authors

doi: 10.5281/zenodo.21074752

broadinstitute/viral-ngs: v3.0.17

Abstract

What's Changed Auto-fix: address open CVE issues (2026-06-13) by @viral-ngs-autofix[bot] in https://github.com/broadinstitute/viral-ngs/pull/1093 Fix splitcode unmatched-count inflation in demux metrics + expose FASTQ-path trim/hamming CLI knobs by @dpark01 in https://github.com/broadinstitute/viral-ngs/pull/1096 Auto-fix: address open CVE issues (2026-06-24) by @viral-ngs-autofix[bot] in https://github.com/broadinstitute/viral-ngs/pull/1099 Full Changelog: https://github.com/broadinstitute/viral-ngs/compare/v3.0.16...v3.0.17

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