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nf-core/fastquorum: 2.0.0

Authors: Zach Norgaard; Nils Homer; Simon Pearce; nf-core bot; Clint Valentine; Charlotte Tolonen; Brent Pedersen;

nf-core/fastquorum: 2.0.0

Abstract

What's Changed New Features Add non-random UMI correction via fgbio CorrectUmis, enabled by an optional umi_file column in the samplesheet https://github.com/nf-core/fastquorum/pull/145 Add optional library_id, lane, and flowcell samplesheet columns and fix silent pre-merge output overwrites across lanes https://github.com/nf-core/fastquorum/pull/147 Enchancements Validate read structures with the nf-fgbio plugin https://github.com/nf-core/fastquorum/pull/123 Add icon image https://github.com/nf-core/fastquorum/pull/128 Update to nf-core/tools template version 3.3.2 https://github.com/nf-core/fastquorum/pull/131 Ensure the PDF from CollectDuplexSeqMetrics is published https://github.com/nf-core/fastquorum/pull/138 Fix Twist UMI docs from random to nonrandom https://github.com/nf-core/fastquorum/pull/141 Update to nf-core/tools template version 3.5.2 with Nextflow strict syntax https://github.com/nf-core/fastquorum/pull/142 Update to nf-core/tools template version 4.0.2 (raise minimum Nextflow to 25.10.4) https://github.com/nf-core/fastquorum/pull/150 Update nf-core modules (bwa, fastqc, multiqc, samtools) https://github.com/nf-core/fastquorum/pull/151 Add environment.yml, meta.yml, and container configs to local modules and recognize the apptainer container engine https://github.com/nf-core/fastquorum/pull/152 New Contributors @cehtolonen made their first contribution in https://github.com/nf-core/fastquorum/pull/128 @clintval made their first contribution in https://github.com/nf-core/fastquorum/pull/138 Full Changelog: https://github.com/nf-core/fastquorum/compare/1.2.0...2.0.0

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