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Other literature type . 2026
License: CC BY
Data sources: ZENODO
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Project deliverable . 2026
License: CC BY
Data sources: Datacite
ZENODO
Project deliverable . 2026
License: CC BY
Data sources: Datacite
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foundingGIDE Deliverable D5.1 Updating existing ontologies, and implementing in data resources

Authors: Hartley, Matthew; Sherwood, Francois; Kyoda, Koji; Onami, Shuichi; Moore, Josh;

foundingGIDE Deliverable D5.1 Updating existing ontologies, and implementing in data resources

Abstract

A core goal of foundingGIDE was to support participating resources to harmonise their formal descriptions of image data using a shared vocabulary. Ontologies and controlled vocabularies provide much of that vocabulary. This deliverable reports on the work of WP5 to update the ontologies chosen as critical to the project, and to implement them within the participating data resources, so that submissions increasingly describe imaging data using agreed, resolvable terms. The deliverable takes as its starting point the ontology set recommended in D2.1 (ontology landscaping and recommendations), and the per-component representation specified in D6.1. First it reports the return of the Biological Imaging Methods Ontology (FBbi) to active maintenance, now as a community effort under the FoundingGIDE project. New terms are being added using community-standard tooling, an open contribution process and continuity of its established identifiers. Second, it reports wider GIDE ontologies implementation in the participating resources. The BioImage Archive now uses FBbi identifiers internally within its RO-Crate-based metadata representation, and has published guidance enabling submitters to record ontology terms using its submission system. The corresponding implementation in SSBD, and guidance on future compatibility with the IDR, are reported in the respective sections. Preclinical imaging ontologies are addressed in D4.1 and are outside the scope of this deliverable. The longer-term sustainability of these maintenance arrangements is the subject of D5.2. This version is pending EC approval.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Green