Changed only one scRNA-seq index generation rule is loaded per run Fixed downloading of gene annotation from NCBI (updated genomepy to 0.16.4) raise a descriptive error if the specified aligner/quantifier is incorrect raise a descriptive error if the gene annotation is required, but is not found locally, and cannot be downloaded integration test for rna-seq error message when SRA is down rule multiqc_explain now works with compound binary CLI arguments (e.g. -rk) rule motif2factors (updated to gimmemotifs 0.18.4 + orthofinder 3.1.5)