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sanger-tol/ascc: 0.7.0dev - Prefect Testing

Authors: Damon-Lee Pointon; YSims; eeaunin; Jim Downie; Will Eagles;

sanger-tol/ascc: 0.7.0dev - Prefect Testing

Abstract

This is a development version of ASCC 0.7.0 with a number of fixes based around getting ASCC working on the Sanger-ToL Prefect workflow manager. Fixes to param evaluations which control process execution Fixes to correct a [ConcurrentModificationException] stopping the use of FCS_ADAPTOR output KMER_COUNTER has been replaced with COBIONTID_KMERCOUNTER to increase efficiency. This required the addition of REFORMAT_NPY_2_CSV to generate the kmer table. FCSGX_RUNGX has been updated to not depend on modulecmd instead, production profiles will instead default to a local installation of fcs_gx. Avoiding containerised options provided in the module.

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