v2.0.1 - [2026-06-16] Added Fixed - [#53](https://github.com/nf-core/phyloplace/pull/53) - Improve documentation of columns in input sheets [addresses #41](https://github.com/nf-core/phyloplace/issues/41) (by @erikrikarddaniel) - [#53](https://github.com/nf-core/phyloplace/pull/53) - Fix broken documentation links for parameters [addresses #49](https://github.com/nf-core/phyloplace/issues/49) (by @erikrikarddaniel) - [#53](https://github.com/nf-core/phyloplace/pull/53) - Improve adherence to Nextflow code standards [addresses #48](https://github.com/nf-core/phyloplace/issues/48) (by @erikrikarddaniel) - [#52](https://github.com/nf-core/phyloplace/pull/52) - Template update for nf-core/tools version 4.0.2 (by @erikrikarddaniel) Dependencies - [#52](https://github.com/nf-core/phyloplace/pull/52) - Update some software versions (by @erikrikarddaniel) | software | previously | now | | ----------- | ---------- | --------- | | nextflow | >=24.04.2 | >=25.10.4 | | hmmer/easel | 0.48 | 0.49 | | hmmer | 3.3.2 | 3.4 | | MultiQC | 1.27 | 1.35 |