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Mol* library

Authors: Rose, Alexander S; Sehnal, David; Bittrich, Sebastian; Kovács, Áron Samuel; Autin, Ludovic; Malý, Michal; Černý, Jiří; +1 Authors

Mol* library

Abstract

Fix exported image artifacts on transparent background with emissive, bloom, or antialiasing Fix cel-shaded ambient color being stripped to luminance (now uses full RGB, matching the classic lighting path) Fix empty transforms default in ShapeFromPly Use morton order for spheres in dot visual with lod-levels Add Camera.changed event and rotation/translation setter/getter Add instanceGranularity: 'auto' as a memory guard Honor instanceGranularity in Visual.getLoci Add mesoscale representation preset Add presets option to ObjectList param definition Fix memory leak in State.dispose() not invoking transformer dispose callbacks for live cells Adds File/Open and drag-and-drop support for Kinemage files in the viewer app Fix bugs in ModelServer surroundingLigands endpoint, resulting in omitWater not honored Fix Volume and Isosurface getBoundingSphere ignoring instances Fix aromatic ring detection not accounting for hybridization Add axis param to camera spin/rock animation Fix SSAO half/quarter resolution textures for multi-scale Camera improvements Add the option to approximate "least obstructed direction" when focusing camera, accessibe via PluginContext.managers.camera.focusLoci with optimizeDirection option Add CameraFocusOptions.zoomOut option that zooms out to to make the entire scene visible before focusing on the target Add easing support in camera transtion Non-covalent interactions: water bridge support Add OBJ format support Positions, normals, faces Groups from usemtl directive Vertex color extension Sideload MTL files (diffuse color only) Download Structure From AlphaFoldDB allows IDs with version suffix (version is ignored) Add loadUrl method and GET params to Viewer app Add binary PLY format variants support Add extensions/plugin with several QoL improvements Standalone useful loading functions previously avaiable only in the Viewer class Standalong plugin interactivity helper function previously available only via the Viewer class View models (and hooks) for more straightforward usage in React (and in other UI libraries) Add examples/react that showcases few ways the Mol* can be used together with React Fix default representation plugin option, which resulted in represenations not being shown automatically when using the default plugin spec Track added custom props in QueryRuntimeTable to prevent excess "symbol already added" messages when creating multiple instances of a pluing

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