This software package contains the R scripts used to generate the figures and analyses reported in the manuscript. Included scripts:- PCA_analysis_06.R (Figure 5A)- Upset_05.R (Figure 5B)- Geneontology_v6.R (Figure 5C)- correlation_plot_v8.R (Figure 6A)- Z-score-i_V10.R (Figures 6B–6C) The repository is publicly available on GitHub and archived on Zenodo for long-term access and reproducibility.