Introduction Data Review and Archive Data review and archiving can be a time-consuming process, especially when done manually. This review report aims to help facilitate both activities. It automates the archiving of datasets, including Darwin Core archives, and is a citable backup of a version of the dataset. Additionally, an automatic review of species interaction claims made in the dataset is generated and registered with Global Biotic Interactions (J. H. Poelen, Simons, and Mungall 2014). This review includes summary statistics about, and observations about, the dataset under review : Banco de Vida/ CJ Museum/ Amphibian collection - Version 2.1 http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=cj_bancovida_museo 2026-06-02T16:44:15.552Z Characterization of Microbiological and Invertebrate Biodiversity in the El Pelado Marine Reserve (REMAPE) at the Taxonomic, Metabolomic, and Metagenomic Levels for Use in Human and Animal Health. - Version 2.3 http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=inmase_ce 2026-06-02T16:44:15.552Z Colección de Anfibios del Museo de Zoología QCAZ - Version 1.3 http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=a5a6e882-b3ce-4e24-b337-33b4295d0620 2026-06-02T16:44:15.552Z Colección de Ornitología del Instituto Nacional de Biodiversidad - Version 2.3 http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=3e52fb9c-1a90-4c3c-bc7e-eca3122e05e8 2026-06-02T16:44:15.552Z Colección de Plantas Vasculares del Herbario UTCEC - Version 2.1 http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=utcec-vasculares 2026-06-02T16:44:15.552Z Colección de Reptiles del Museo de Zoología QCAZ - Version 1.1 http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=84c3ac77-2f3d-4f8a-bb24-129300b030ca 2026-06-02T16:44:15.552Z Colección de Vertebrados Estación Científica Charles Darwin - Version 2.0 http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=vccdrs 2026-06-02T16:44:15.552Z Colección Marina Estación Científica Charles Darwin - Version 2.0 http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=mccdrs 2026-06-02T16:44:15.552Z Registros de conflicto humano-fauna en Ecuador desde el año 2009 al 2022 - Version 1.4 http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=humano-fauna 2026-06-02T16:44:15.552Z hash://md5/aea4c7e89ecce41e721049675ac6bd10 Methods The review is performed through programmatic scripts that leverage tools like Preston (Elliott et al. 2025), Elton (Kuhn, Poelen, and Leinweber 2025), Nomer (Salim and Poelen 2025), globinizer (J. Poelen, Seltmann, and Mietchen 2024) combined with third-party tools like grep, mlr, tail and head. Tools used in this review process tool name version preston 0.11.1 elton 0.16.11 nomer 0.6.5 globinizer 0.4.0 mlr 6.0.0 jq 1.6 yq 4.25.3 pandoc 3.1.6.1 duckdb 1.3.1 mapserver 7.6.4 The review process can be described in the form of the script below 1. # get versioned copy of the dataset (size approx. 101MiB) under review elton pull globalbioticinteractions/maate # generate review notes elton review globalbioticinteractions/maate \ > review.tsv # export indexed interaction records elton interactions globalbioticinteractions/maate \ > interactions.tsv # export names and align them with the Catalogue of Life using Nomer elton names globalbioticinteractions/maate \ | nomer append col \ > name-alignment.tsv or visually, in a process diagram. Review Process Overview You can find a copy of the full review script at check-data.sh. See also GitHub and Codeberg. Results In the following sections, the results of the review are summarized 2. Then, links to the detailed review reports are provided. Files An extensive list of files produced as part of the review process can be found in Appendix A. Review Files. Archived Dataset Note that data.zip file in this archive contains the complete, unmodified archived dataset under review. Biotic Interactions Biotic Interaction Data Model In this review, biotic interactions (or biotic associations) are modeled as a primary (aka subject, source) organism interacting with an associate (aka object, target) organism. The dataset under review classified the primary/associate organisms with specific taxa. The primary and associate organisms The kind of interaction is documented as an interaction type. The dataset under review, named globalbioticinteractions/maate, has fingerprint hash://md5/aea4c7e89ecce41e721049675ac6bd10, is 101MiB in size and contains 686 interactions with 6 unique types of associations (e.g., adjacentTo) between 197 primary taxa (e.g., Bos taurus) and 274 associated taxa (e.g., Bos taurus). An exhaustive list of indexed interaction claims can be found in gzipped csv, tsv, geopackage and parquet archives. To facilitate discovery, a preview of claims available in the gzipped html page at indexed-interactions.html.gz are shown below. The exhaustive list was used to create the following data summaries below. Sample of Indexed Interaction Claims sourceTaxonName interactionTypeName targetTaxonName referenceCitation Aplysina interactsWith Chordata 150813EP07-10 Ascidia interactsWith Chordata 150924EP01-04 Didemnum interactsWith Chordata 150924EP07-04 Muricea austera interactsWith Didemnum sp. 160212EP13-02 Most Frequently Mentioned Interaction Types (up to 20 most frequent) interactionTypeName count adjacentTo 299 preysOn 163 preyedUponBy 163 interactsWith 33 hasHost 22 killedBy 6 Most Frequently Mentioned Primary Taxa (up to 20 most frequent) sourceTaxonName count Bos taurus 108 Tremarctos ornatus 82 Puma concolor 41 Panthera onca 29 Pristimantis Indeterminado 21 Ovis aries 21 Pristimantis andinognomus 13 Engystomops petersi 12 Lynchius Indeterminado 9 Pristimantis brevicrus 8 Rhinella acutirostris 8 Anolis fuscoauratus 7 Pristimantis sternothylax 7 Anolis scypheus 6 Anolis aequatorialis 6 Anolis peraccae 6 Scinax tsachila 5 Pristimantis lanthanites 5 Osteocephalus mutabor 5 Most Frequently Mentioned Associate Taxa (up to 20 most frequent) targetTaxonName count Bos taurus 108 Tremarctos ornatus 82 Puma concolor 41 Panthera onca 29 the ground 21 Ovis aries 21 the road 10 crosses in lab 7 leaf 6 vegetation at 10-20 cm 6 Chordata 5 tree 5 a leaf at 30 cm 5 Cnidarian 4 a leaf at 50 cm 4 log 4 vehicle 4 a leaf at 60 cm 4 the ground in leaf litter 4 Most Frequent Interactions between Primary and Associate Taxa (up to 20 most frequent) sourceTaxonName interactionTypeName targetTaxonName count Tremarctos ornatus preysOn Bos taurus 70 Bos taurus preyedUponBy Tremarctos ornatus 70 Panthera onca preysOn Bos taurus 24 Bos taurus preyedUponBy Panthera onca 24 Puma concolor preysOn Ovis aries 21 Ovis aries preyedUponBy Puma concolor 21 Puma concolor preysOn Bos taurus 8 Bos taurus preyedUponBy Puma concolor 8 Engystomops petersi interactsWith crosses in lab 7 Epipedobates anthonyi adjacentTo the ground 5 Pristimantis Indeterminado adjacentTo vegetation at 10-20 cm 4 Tremarctos ornatus preysOn Bos spp 4 Bos spp preyedUponBy Tremarctos ornatus 4 Scinax tsachila adjacentTo branches and leaves of scrub 1m above ground 3 Allobates femoralis adjacentTo ground (mud) 3 Pristimantis malkini adjacentTo leaf 3 Pristimantis andinognomus adjacentTo a leaf at 60 cm 3 Lynchius Indeterminado adjacentTo the ground in leaf litter 3 Pristimantis Indeterminado adjacentTo the ground 3 Interaction Networks The figures below provide a graph view on the dataset under review. The first shows a summary network on the kingdom level, and the second shows how interactions on the family level. It is important to note that both network graphs were first aligned taxonomically using the Catalogue of Life. Please refer to the original (or verbatim) taxonomic names for a more original view on the interaction data. Interactions on taxonomic kingdom rank as interpreted by the Catalogue of Life download svg Interactions on the taxonomic family rank as interpreted by the Catalogue of Life. download svg You can download the indexed dataset under review at indexed-interactions.csv.gz. A tab-separated file can be found at indexed-interactions.tsv.gz Geospatial Distribution If geospatial information was extracted from the dataset under review, the map below will show their distribution. These maps were generated using MapServer (McKenna et al. 2025) tools configured via map configuration indexed-interactions.map : MAP SIZE 1600 800 EXTENT -180 -90 180 90 PROJECTION "init=epsg:4326" END LAYER # MODIS WMS map from NASA NAME "modis_nasa" TYPE RASTER OFFSITE 0 0 0 STATUS ON CONNECTIONTYPE WMS CONNECTION "https://gibs.earthdata.nasa.gov/wms/epsg4326/best/wms.cgi?" METADATA "wms_srs" "EPSG:4326" "wms_name" "OSM_Land_Water_Map" "wms_server_version" "1.1.1" "wms_format" "image/jpeg" END CLASS STYLE COLOR 232 232 232 OUTLINECOLOR 32 32 32 END END END LAYER NAME "indexed-interactions" TYPE POLYGON STATUS ON CONNECTIONTYPE OGR CONNECTION "indexed-interactions-h3.gpkg" DATA "indexed-interactions-h3" CLASS STYLE COLORRANGE 253.0 231.0 37.0 32.0 164.0 134.0 DATARANGE 0.9030899869919435 2.2576785748691846 RANGEITEM "log_number_of_records" OUTLINECOLOR 0 0 0 END END END END Hexagonal grid cells indicate that interactions claims are available for selected geospatial area: light yellow means relatively fewer claims, dark green relatively more claims. Associated data can be found in the geopackage files at indexed-interactions.gpkg for point data and indexed-interactions-h3.gpkg for data clustered in geospatial h3 hexagonals. Learn more about the structure of this download at GloBI website, by opening a GitHub issue, or by sending an email. Another way to discover the dataset under review is by searching for it on the GloBI website. Taxonomic Alignment As part of the review, all names are aligned against various name catalogs (e.g., col, ncbi, discoverlife, gbif, itis, wfo, mdd, tpt, pbdb, and worms). These alignments can help review name usage or aid in selecting of a suitable taxonomic name resource. Sample of Name Alignments providedName relationName resolvedCatalogName resolvedName Vernonanthura patens HAS_ACCEPTED_NAME col Vernonanthura patens Del suelo NONE col Del suelo Peperomia HAS_ACCEPTED_NAME col Peperomia Monnina herbacea HAS_ACCEPTED_NAME col Monnina herbacea Distribution of Taxonomic Ranks of Aligned Names by Catalog. Names that were not aligned with a catalog are counted as NAs. So, the total number of unaligned names for a catalog will be listed in their NA row. resolvedCatalogName resolvedRank count col NA 167 col genus 20 col kingdom 1 col phylum 6 col species 167 col subgenus 1 col subspecies 4 discoverlife NA 364 discoverlife species 1 gbif NA 170 gbif genus 20 gbif kingdom 1 gbif phylum 6 gbif species 163 gbif subspecies 5 itis NA 180 itis genus 18 itis kingdom 1 itis phylum 6 itis species 154 itis subspecies 5 mdd NA 364 ncbi NA 187 ncbi genus 19 ncbi kingdom 1 ncbi phylum 6 ncbi species 149 ncbi subgenus 1 ncbi subspecies 3 pbdb NA 323 pbdb genus 8 pbdb kingdom 1 pbdb phylum 6 pbdb species 26 pbdb unranked clade 1 tpt NA 342 tpt genus 4 tpt species 18 wfo NA 356 wfo genus 4 wfo phylum 1 wfo species 3 worms NA 327 worms genus 12 worms kingdom 1 worms phylum 6 worms species 18 Name relationship types per catalog. Name relationship type "NONE" means that a name was not recognized by the associated catalog. "SAME_AS" indicates either a "HAS_ACCEPTED_NAME" or "SYNONYM_OF" name relationship type. We recognize that "SYNONYM_OF" encompasses many types of nomenclatural synonymies resolvedCatalogName relationName count col HAS_ACCEPTED_NAME 229 col NONE 231 col SYNONYM_OF 14 discoverlife NONE 470 discoverlife HAS_ACCEPTED_NAME 1 gbif HAS_ACCEPTED_NAME 242 gbif NONE 236 gbif SYNONYM_OF 17 itis NONE 246 itis HAS_ACCEPTED_NAME 210 itis SYNONYM_OF 6 mdd NONE 422 mdd HAS_ACCEPTED_NAME 40 ncbi SAME_AS 204 ncbi NONE 261 ncbi SYNONYM_OF 7 pbdb NONE 394 pbdb HAS_ACCEPTED_NAME 69 pbdb SYNONYM_OF 6 tpt NONE 416 tpt HAS_ACCEPTED_NAME 46 wfo HAS_ACCEPTED_NAME 7 wfo NONE 453 wfo SYNONYM_OF 1 wfo HAS_UNCHECKED_NAME 1 worms HAS_ACCEPTED_NAME 54 worms NONE 408 worms SYNONYM_OF 2 List of Available Name Alignment Reports catalog name alignment results col associated names alignments report in gzipped html, csv, and tsv) ncbi associated names alignments report in gzipped html, csv, and tsv) discoverlife associated names alignments report in gzipped html, csv, and tsv) gbif associated names alignments report in gzipped html, csv, and tsv) itis associated names alignments report in gzipped html, csv, and tsv) wfo associated names alignments report in gzipped html, csv, and tsv) mdd associated names alignments report in gzipped html, csv, and tsv) tpt associated names alignments report in gzipped html, csv, and tsv) pbdb associated names alignments report in gzipped html, csv, and tsv) worms associated names alignments report in gzipped html, csv, and tsv) Additional Reviews Elton, Nomer, and other tools may have difficulties interpreting existing species interaction datasets. Or, they may misbehave, or otherwise show unexpected behavior. As part of the review process, detailed review notes are kept that document possibly misbehaving, or confused, review bots. An sample of review notes associated with this review can be found below. First few lines in the review notes. reviewDate reviewCommentType reviewComment 2026-06-03T18:53:46Z note [] Caused by: org.eol.globi.data.StudyImporterException: failed to read archive [http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=b52174ab-6862-4a34-9bb6-c1fc9e3fa99d] at org.eol.globi.data.DatasetImporterForDwCA.importStudy(DatasetImporterForDwCA.java:365) at org.eol.globi.util.DatasetImportUtil.importDataset(DatasetImportUtil.java:71) at org.eol.globi.util.DatasetImportUtil.importDataset(DatasetImportUtil.java:42) at org.eol.globi.util.DatasetImportUtil.indexDatasets(DatasetImportUtil.java:160) at org.eol.globi.util.DatasetImportUtil.indexUnresolvedDependencies(DatasetImportUtil.java:117) at org.eol.globi.util.DatasetImportUtil.resolveAndImportDatasets(DatasetImportUtil.java:84) at org.eol.globi.data.DatasetImporterForRSS.importStudy(DatasetImporterForRSS.java:45) at org.eol.globi.util.DatasetImportUtil.importDataset(DatasetImportUtil.java:71) at org.globalbioticinteractions.elton.cmd.CmdReview.review(CmdReview.java:259) at org.globalbioticinteractions.elton.cmd.CmdReview.reviewLocal(CmdReview.java:212) at org.globalbioticinteractions.elton.cmd.CmdReview.doRun(CmdReview.java:147) at org.globalbioticinteractions.elton.cmd.CmdDefaultParams.run(CmdDefaultParams.java:223) at org.globalbioticinteractions.elton.cmd.CmdTabularWriterParams.run(CmdTabularWriterParams.java:12) at picocli.CommandLine.executeUserObject(CommandLine.java:1939) at picocli.CommandLine.access1300(CommandLine.java:145)atpicocli.CommandLineRunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2358) at picocli.CommandLineRunLast.handle(CommandLine.java:2352)atpicocli.CommandLineRunLast.handle(CommandLine.java:2314) at picocli.CommandLineAbstractParseResultHandler.execute(CommandLine.java:2179)atpicocli.CommandLineRunLast.execute(CommandLine.java:2316) at picocli.CommandLine.execute(CommandLine.java:2078) at org.globalbioticinteractions.elton.Elton.run(Elton.java:110) at org.globalbioticinteractions.elton.Elton.main(Elton.java:94) Caused by: java.io.IOException: resource [http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=b52174ab-6862-4a34-9bb6-c1fc9e3fa99d] not found at [http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=b52174ab-6862-4a34-9bb6-c1fc9e3fa99d] at org.globalbioticinteractions.cache.CacheProxyForDataset.retrieve(CacheProxyForDataset.java:37) at org.globalbioticinteractions.dataset.DatasetWithCache.retrieve(DatasetWithCache.java:35) at org.globalbioticinteractions.dataset.DatasetProxy.retrieve(DatasetProxy.java:29) at org.globalbioticinteractions.dataset.DatasetProxy.retrieve(DatasetProxy.java:29) at org.globalbioticinteractions.dataset.DatasetProxy.retrieve(DatasetProxy.java:29) at org.eol.globi.data.DatasetImporterForDwCA.importStudy(DatasetImporterForDwCA.java:334) … 22 more 2026-06-03T18:54:56Z note [] Caused by: org.eol.globi.data.StudyImporterException: failed to read archive [http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=b52174ab-6862-4a34-9bb6-c1fc9e3fa99d] at org.eol.globi.data.DatasetImporterForDwCA.importStudy(DatasetImporterForDwCA.java:365) at org.eol.globi.util.DatasetImportUtil.importDataset(DatasetImportUtil.java:71) at org.eol.globi.util.DatasetImportUtil.importDataset(DatasetImportUtil.java:42) at org.eol.globi.util.DatasetImportUtil.indexDatasets(DatasetImportUtil.java:160) at org.eol.globi.util.DatasetImportUtil.resolveDependencies(DatasetImportUtil.java:104) at org.eol.globi.util.DatasetImportUtil.resolveAndImportDatasets(DatasetImportUtil.java:86) at org.eol.globi.data.DatasetImporterForRSS.importStudy(DatasetImporterForRSS.java:45) at org.eol.globi.util.DatasetImportUtil.importDataset(DatasetImportUtil.java:71) at org.globalbioticinteractions.elton.cmd.CmdReview.review(CmdReview.java:259) at org.globalbioticinteractions.elton.cmd.CmdReview.reviewLocal(CmdReview.java:212) at org.globalbioticinteractions.elton.cmd.CmdReview.doRun(CmdReview.java:147) at org.globalbioticinteractions.elton.cmd.CmdDefaultParams.run(CmdDefaultParams.java:223) at org.globalbioticinteractions.elton.cmd.CmdTabularWriterParams.run(CmdTabularWriterParams.java:12) at picocli.CommandLine.executeUserObject(CommandLine.java:1939) at picocli.CommandLine.access1300(CommandLine.java:145)atpicocli.CommandLineRunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2358) at picocli.CommandLineRunLast.handle(CommandLine.java:2352)atpicocli.CommandLineRunLast.handle(CommandLine.java:2314) at picocli.CommandLineAbstractParseResultHandler.execute(CommandLine.java:2179)atpicocli.CommandLineRunLast.execute(CommandLine.java:2316) at picocli.CommandLine.execute(CommandLine.java:2078) at org.globalbioticinteractions.elton.Elton.run(Elton.java:110) at org.globalbioticinteractions.elton.Elton.main(Elton.java:94) Caused by: java.io.IOException: resource [http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=b52174ab-6862-4a34-9bb6-c1fc9e3fa99d] not found at [http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=b52174ab-6862-4a34-9bb6-c1fc9e3fa99d] at org.globalbioticinteractions.cache.CacheProxyForDataset.retrieve(CacheProxyForDataset.java:37) at org.globalbioticinteractions.dataset.DatasetWithCache.retrieve(DatasetWithCache.java:35) at org.globalbioticinteractions.dataset.DatasetProxy.retrieve(DatasetProxy.java:29) at org.globalbioticinteractions.dataset.DatasetProxy.retrieve(DatasetProxy.java:29) at org.globalbioticinteractions.dataset.DatasetProxy.retrieve(DatasetProxy.java:29) at org.eol.globi.data.DatasetImporterForDwCA.importStudy(DatasetImporterForDwCA.java:334) … 22 more 2026-06-03T18:55:54Z note found unresolved reference [44a8e8e7-16de-4897-a1cb-7af5aa838733] 2026-06-03T18:55:54Z note found unresolved reference [6ec4323f-1bd7-49f8-a9a8-9dc1db45b137] In addition, you can find the most frequently occurring notes in the table below. Most frequently occurring review notes, if any. reviewComment count [] Caused by: org.eol.globi.data.StudyImporterException: failed to read archive [http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=b52174ab-6862-4a34-9bb6-c1fc9e3fa99d] at org.eol.globi.data.DatasetImporterForDwCA.importStudy(DatasetImporterForDwCA.java:365) at org.eol.globi.util.DatasetImportUtil.importDataset(DatasetImportUtil.java:71) at org.eol.globi.util.DatasetImportUtil.importDataset(DatasetImportUtil.java:42) at org.eol.globi.util.DatasetImportUtil.indexDatasets(DatasetImportUtil.java:160) at org.eol.globi.util.DatasetImportUtil.indexUnresolvedDependencies(DatasetImportUtil.java:117) at org.eol.globi.util.DatasetImportUtil.resolveAndImportDatasets(DatasetImportUtil.java:84) at org.eol.globi.data.DatasetImporterForRSS.importStudy(DatasetImporterForRSS.java:45) at org.eol.globi.util.DatasetImportUtil.importDataset(DatasetImportUtil.java:71) at org.globalbioticinteractions.elton.cmd.CmdReview.review(CmdReview.java:259) at org.globalbioticinteractions.elton.cmd.CmdReview.reviewLocal(CmdReview.java:212) at org.globalbioticinteractions.elton.cmd.CmdReview.doRun(CmdReview.java:147) at org.globalbioticinteractions.elton.cmd.CmdDefaultParams.run(CmdDefaultParams.java:223) at org.globalbioticinteractions.elton.cmd.CmdTabularWriterParams.run(CmdTabularWriterParams.java:12) at picocli.CommandLine.executeUserObject(CommandLine.java:1939) at picocli.CommandLine.access1300(CommandLine.java:145)atpicocli.CommandLineRunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2358) at picocli.CommandLineRunLast.handle(CommandLine.java:2352)atpicocli.CommandLineRunLast.handle(CommandLine.java:2314) at picocli.CommandLineAbstractParseResultHandler.execute(CommandLine.java:2179)atpicocli.CommandLineRunLast.execute(CommandLine.java:2316) at picocli.CommandLine.execute(CommandLine.java:2078) at org.globalbioticinteractions.elton.Elton.run(Elton.java:110) at org.globalbioticinteractions.elton.Elton.main(Elton.java:94) Caused by: java.io.IOException: resource [http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=b52174ab-6862-4a34-9bb6-c1fc9e3fa99d] not found at [http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=b52174ab-6862-4a34-9bb6-c1fc9e3fa99d] at org.globalbioticinteractions.cache.CacheProxyForDataset.retrieve(CacheProxyForDataset.java:37) at org.globalbioticinteractions.dataset.DatasetWithCache.retrieve(DatasetWithCache.java:35) at org.globalbioticinteractions.dataset.DatasetProxy.retrieve(DatasetProxy.java:29) at org.globalbioticinteractions.dataset.DatasetProxy.retrieve(DatasetProxy.java:29) at org.globalbioticinteractions.dataset.DatasetProxy.retrieve(DatasetProxy.java:29) at org.eol.globi.data.DatasetImporterForDwCA.importStudy(DatasetImporterForDwCA.java:334) … 22 more 1 [] Caused by: org.eol.globi.data.StudyImporterException: failed to read archive [http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=b52174ab-6862-4a34-9bb6-c1fc9e3fa99d] at org.eol.globi.data.DatasetImporterForDwCA.importStudy(DatasetImporterForDwCA.java:365) at org.eol.globi.util.DatasetImportUtil.importDataset(DatasetImportUtil.java:71) at org.eol.globi.util.DatasetImportUtil.importDataset(DatasetImportUtil.java:42) at org.eol.globi.util.DatasetImportUtil.indexDatasets(DatasetImportUtil.java:160) at org.eol.globi.util.DatasetImportUtil.resolveDependencies(DatasetImportUtil.java:104) at org.eol.globi.util.DatasetImportUtil.resolveAndImportDatasets(DatasetImportUtil.java:86) at org.eol.globi.data.DatasetImporterForRSS.importStudy(DatasetImporterForRSS.java:45) at org.eol.globi.util.DatasetImportUtil.importDataset(DatasetImportUtil.java:71) at org.globalbioticinteractions.elton.cmd.CmdReview.review(CmdReview.java:259) at org.globalbioticinteractions.elton.cmd.CmdReview.reviewLocal(CmdReview.java:212) at org.globalbioticinteractions.elton.cmd.CmdReview.doRun(CmdReview.java:147) at org.globalbioticinteractions.elton.cmd.CmdDefaultParams.run(CmdDefaultParams.java:223) at org.globalbioticinteractions.elton.cmd.CmdTabularWriterParams.run(CmdTabularWriterParams.java:12) at picocli.CommandLine.executeUserObject(CommandLine.java:1939) at picocli.CommandLine.access1300(CommandLine.java:145)atpicocli.CommandLineRunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2358) at picocli.CommandLineRunLast.handle(CommandLine.java:2352)atpicocli.CommandLineRunLast.handle(CommandLine.java:2314) at picocli.CommandLineAbstractParseResultHandler.execute(CommandLine.java:2179)atpicocli.CommandLineRunLast.execute(CommandLine.java:2316) at picocli.CommandLine.execute(CommandLine.java:2078) at org.globalbioticinteractions.elton.Elton.run(Elton.java:110) at org.globalbioticinteractions.elton.Elton.main(Elton.java:94) Caused by: java.io.IOException: resource [http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=b52174ab-6862-4a34-9bb6-c1fc9e3fa99d] not found at [http://patrimonio.ambiente.gob.ec/iptmae/archive.do?r=b52174ab-6862-4a34-9bb6-c1fc9e3fa99d] at org.globalbioticinteractions.cache.CacheProxyForDataset.retrieve(CacheProxyForDataset.java:37) at org.globalbioticinteractions.dataset.DatasetWithCache.retrieve(DatasetWithCache.java:35) at org.globalbioticinteractions.dataset.DatasetProxy.retrieve(DatasetProxy.java:29) at org.globalbioticinteractions.dataset.DatasetProxy.retrieve(DatasetProxy.java:29) at org.globalbioticinteractions.dataset.DatasetProxy.retrieve(DatasetProxy.java:29) at org.eol.globi.data.DatasetImporterForDwCA.importStudy(DatasetImporterForDwCA.java:334) … 22 more 1 found unresolved reference [44a8e8e7-16de-4897-a1cb-7af5aa838733] 1 found unresolved reference [6ec4323f-1bd7-49f8-a9a8-9dc1db45b137] 1 For additional information on review notes, please have a look at the first 500 Review Notes in html format or the download full gzipped csv or tsv archives. GloBI Review Badge As part of the review, a review badge is generated. This review badge can be included in webpages to indicate the review status of the dataset under review. Picture of a GloBI Review Badge 3 Note that if the badge is green, no review notes were generated. If the badge is yellow, the review bots may need some help with interpreting the species interaction data. GloBI Index Badge If the dataset under review has been registered with GloBI, and has been succesfully indexed by GloBI, the GloBI Index Status Badge will turn green. This means that the dataset under review was indexed by GloBI and is available through GloBI services and derived data products. Picture of a GloBI Index Badge 4 If you'd like to keep track of reviews or index status of the dataset under review, please visit GloBI's dataset index 5 for badge examples. Discussion This review and archive provides a means of creating citable versions of datasets that change frequently. This may be useful for dataset managers, including natural history collection data managers, as a backup archive of a shared Darwin Core archive. It also serves as a means of creating a trackable citation for the dataset in an automated way, while also including some information about the contents of the dataset. This review aims to provide a perspective on the dataset to aid in understanding of species interaction claims discovered. However, it is important to note that this review does not assess the quality of the dataset. Instead, it serves as an indication of the open-ness6 and FAIRness (Wilkinson et al. 2016; Trekels et al. 2023) of the dataset: to perform this review, the data was likely openly available, Findable, Accessible, Interoperable and Reusable. The current Open-FAIR assessment is qualitative, and a more quantitative approach can be implemented with specified measurement units. This report also showcases the reuse of machine-actionable (meta)data, something highly recommended by the FAIR Data Principles (Wilkinson et al. 2016). Making (meta)data machine-actionable enables more precise procesing by computers, enabling even naive review bots like Nomer and Elton to interpret the data effectively. This capability is crucial for not just automating the generation of reports, but also for facilitating seamless data exchanges, promoting interoperability. Acknowledgements We thank the many humans that created us and those who created and maintained the data, software and other intellectual resources that were used for producing this review. In addition, we are grateful for the natural resources providing the basis for these human and bot activities. Also, thanks to https://github.com/zygoballus for helping improve the layout of the review tables. Author contributions Nomer was responsible for name alignments. Elton carried out dataset extraction, and generated the review notes. Preston tracked, versioned, and packaged, the dataset under review. Appendix A. Review Files The following files are produced in this review: filename description biblio.bib list of bibliographic reference of this review check-dataset.sh data review workflow/process as expressed in a bash script data.zip a versioned archive of the data under review HEAD the digital signature of the data under review index.docx review in MS Word format index.html review in HTML format index.md review in Pandoc markdown format index.pdf review in PDF format indexed-citations.csv.gz list of distinct reference citations for reviewed species interaction claims in gzipped comma-separated values file format indexed-citations.html.gz list of distinct reference citations for reviewed species interactions claims in gzipped html file format indexed-citations.tsv.gz list of distinct reference citations for reviewed species interaction claims in gzipped tab-separated values format indexed-interactions-col-family-col-family.svg network diagram showing the taxon family to taxon family interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) indexed-interactions-col-kingdom-col-kingdom.svg network diagram showing the taxon kingdom to taxon kingom interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) indexed-interactions.csv.gz species interaction claims indexed from the dataset under review in gzipped comma-separated values format indexed-interactions.html.gz species interaction claims indexed from the dataset under review in gzipped html format indexed-interactions.tsv.gz species interaction claims indexed from the dataset under review in gzipped tab-separated values format indexed-interactions.parquet species interaction claims indexed from the dataset under review in Apache Parquet format indexed-interactions.png species interaction claims indexed from the dataset under review plotted on a map indexed-interactions.map mapserver configuration to plot species interaction claims indexed from the dataset under review on a map indexed-interactions.gpkg species interaction claims indexed from the dataset under review in GeoPackage format indexed-interactions-h3.gpkg geospatially clustered h3 species interaction claims indexed from the dataset under review in GeoPackage format indexed-interactions-sample.csv list of species interaction claims indexed from the dataset under review in gzipped comma-separated values format indexed-interactions-sample.html first 500 species interaction claims indexed from the dataset under review in html format indexed-interactions-sample.tsv first 500 species interaction claims indexed from the dataset under review in tab-separated values format indexed-names.csv.gz taxonomic names indexed from the dataset under review in gzipped comma-separated values format indexed-names.html.gz taxonomic names found in the dataset under review in gzipped html format indexed-names.tsv.gz taxonomic names found in the dataset under review in gzipped tab-separated values format indexed-names.parquet taxonomic names found in the dataset under review in Apache Parquet format indexed-names-resolved-col.csv.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-col.html.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-col.tsv.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-col.parquet taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-discoverlife.csv.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-discoverlife.html.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-discoverlife.tsv.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-discoverlife.parquet taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-gbif.csv.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-gbif.html.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-gbif.tsv.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-gbif.parquet taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-itis.csv.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-itis.html.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-itis.tsv.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-itis.parquet taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-mdd.csv.gz taxonomic names found in the dataset under review aligned with the Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-mdd.html.gz taxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-mdd.tsv.gz taxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-mdd.parquet taxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-ncbi.csv.gz taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-ncbi.html.gz taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-ncbi.tsv.gz taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-ncbi.parquet taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-pbdb.csv.gz taxonomic names found in the dataset under review aligned with the Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-pbdb.html.gz taxonomic names found in the dataset under review aligned with Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-pbdb.tsv.gz taxonomic names found in the dataset under review aligned with Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-pbdb.parquet taxonomic names found in the dataset under review aligned with Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-tpt.csv.gz taxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-tpt.html.gz taxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-tpt.tsv.gz taxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-tpt.parquet taxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-wfo.csv.gz taxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-wfo.html.gz taxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-wfo.tsv.gz taxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-wfo.parquet taxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-worms.csv.gz taxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-worms.html.gz taxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-worms.tsv.gz taxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-worms.parquet taxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-sample.csv first 500 taxonomic names found in the dataset under review in comma-separated values format indexed-names-sample.html first 500 taxonomic names found in the dataset under review in html format indexed-names-sample.tsv first 500 taxonomic names found in the dataset under review in tab-separated values format interaction.svg diagram summarizing the data model used to index species interaction claims nanopub-sample.trig first 500 species interaction claims as expressed in the nanopub format (Kuhn and Dumontier 2014) nanopub.trig.gz species interaction claims as expressed in the nanopub format (Kuhn and Dumontier 2014) process.svg diagram summarizing the data review processing workflow prov.nq origin of the dataset under review as expressed in rdf/nquads review.csv.gz review notes associated with the dataset under review in gzipped comma-separated values format review.html.gz review notes associated with the dataset under review in gzipped html format review.tsv.gz review notes associated with the dataset under review in gzipped tab-separated values format review-sample.csv first 500 review notes associated with the dataset under review in comma-separated values format review-sample.html first 500 review notes associated with the dataset under review in html format review-sample.tsv first 500 review notes associated with the dataset under review in tab-separated values format review.svg a review badge generated as part of the dataset review process zenodo.json metadata of this review expressed in Zenodo record metadata References Elliott, Michael, Jorrit Poelen, Icaro Alzuru, Emilio Berti, and partha04patel. 2025. "Bio-Guoda/Preston: 0.10.5." Zenodo. https://doi.org/10.5281/zenodo.14662206. ICZN. 1999. "International Code of Zoological Nomenclature." The International Trust for Zoological Nomenclature, London, UK. https://www.iczn.org/the-code/the-code-online/. Kuhn, Tobias, and Michel Dumontier. 2014. "Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data." In The Semantic Web: Trends and Challenges, edited by Valentina Presutti, Claudia d'Amato, Fabien Gandon, Mathieu d'Aquin, Steffen Staab, and Anna Tordai, 395–410. Cham: Springer International Publishing. Kuhn, Tobias, Jorrit Poelen, and Katrin Leinweber. 2025. "Globalbioticinteractions/Elton: 0.15.1." Zenodo. https://doi.org/10.5281/zenodo.14927734. McKenna, Jeff, Steve Lime, Thomas Bonfort, Jérome Boué, Howard Butler, Seth Girvin, Tom Kralidis, et al. 2025. "MapServer." Zenodo. https://doi.org/10.5281/zenodo.17807263. Poelen, Jorrit H. (ed.). 2024. "Nomer Corpus of Taxonomic Resources Hash://Sha256/ B60c0d25a16ae77b24305782017b1a270b79b5d1746f832650 F2027ba536e276 Hash://Md5/17f1363a277ee0e4ecaf1b91c665e47e." Zenodo. https://doi.org/10.5281/zenodo.12695629. Poelen, Jorrit H., James D. Simons, and Chris J. Mungall. 2014. "Global Biotic Interactions: An Open Infrastructure to Share and Analyze Species-Interaction Datasets." Ecological Informatics 24 (November): 148–59. https://doi.org/10.1016/j.ecoinf.2014.08.005. Poelen, Jorrit, Katja Seltmann, and Daniel Mietchen. 2024. "Globalbioticinteractions/Globinizer: 0.4.0." Zenodo. https://doi.org/10.5281/zenodo.10647565. Salim, José Augusto, and Jorrit Poelen. 2025. "Globalbioticinteractions/Nomer: 0.5.15." Zenodo. https://doi.org/10.5281/zenodo.14893840. Trekels, Maarten, Debora Pignatari Drucker, José Augusto Salim, Jeff Ollerton, Jorrit Poelen, Filipi Miranda Soares, Max Rünzel, Muo Kasina, Quentin Groom, and Mariano Devoto. 2023. "WorldFAIR Project (D10.1) Agriculture-related pollinator data standards use cases report." Zenodo. https://doi.org/10.5281/zenodo.8176978. Wilkinson, Mark D., Michel Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, et al. 2016. "The FAIR Guiding Principles for Scientific Data Management and Stewardship." Scientific Data 3 (1). https://doi.org/10.1038/sdata.2016.18. Note that you have to first get the data (e.g., via elton pull globalbioticinteractions/maate) before being able to generate reviews (e.g., elton review globalbioticinteractions/maate), extract interaction claims (e.g., elton interactions globalbioticinteractions/maate), or list taxonomic names (e.g., elton names globalbioticinteractions/maate)↩︎ Disclaimer: The results in this review should be considered friendly, yet naive, notes from an unsophisticated robot. Please keep that in mind when considering the review results.↩︎ Up-to-date status of the GloBI Review Badge can be retrieved from the GloBI Review Depot↩︎ Up-to-date status of the GloBI Index Badge can be retrieved from GloBI's API↩︎ At time of writing (2026-06-03) the version of the GloBI dataset index was available at https://globalbioticinteractions.org/datasets↩︎ According to http://opendefinition.org/: "Open data is data that can be freely used, re-used and redistributed by anyone - subject only, at most, to the requirement to attribute and sharealike."↩︎

Life on Earth is sustained by complex interactions between organisms and their environment. These biotic interactions can be captured in datasets and published digitally. We present a review and archiving process for such an openly accessible digital interactions dataset of known origin and discuss its outcome. The dataset under review, named globalbioticinteractions/maate, has fingerprint hash://md5/aea4c7e89ecce41e721049675ac6bd10, is 101MiB in size and contains 686 interactions with 6 unique types of associations (e.g., adjacentTo) between 197 primary taxa (e.g., Bos taurus) and 274 associated taxa (e.g., Bos taurus). This report includes detailed summaries of interaction data, a taxonomic review from multiple catalogs, and an archived version of the dataset from which the reviews are derived.