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ZENODO
Dataset
Data sources: ZENODO
Zenodo
Claim

RegEl2: extracting DNA regulatory elements and their relations from the literature

Research datakeyboard_double_arrow_right Dataset Under curationPublisher:Zenodo
Authors: Garda, Samuele; Lenihan-Geels, Freyda; Proft, Sebastian; Küchler, Oliver; Stenzel, Werner; Schülke, Markus; Seelow, Dominik; +1 Authors

doi: 10.5281/zenodo.20508046

RegEl2: extracting DNA regulatory elements and their relations from the literature

Abstract

Citation: manuscript under review Files: corpus.zip: RegEl2 corpus annotated with enhancers, promoters, TFBS, genes, diseases, variants (in brat standoff format: https://brat.nlplab.org/standoff.html) regel2-lmdb.zip: literature-mined database of PubMed abstracts. Each abstracts containes at least one annotated mention of either an enhancer, promoter or TFBS. The abstracts may contain relation annotations: a gene-regulatory element or disease-regulatory element relation.

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